1. Home
  2. Mutant Lines
  3. 53-2087-1

53-2087-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3955272 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -4670; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 1910; Region: intergenic
    2. Chromosome: 3; Position: 13591014 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7040; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10786; Region: intergenic
    3. Chromosome: 3; Position: 13591726 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7752; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10074; Region: intergenic
    Flanking Genome Sequence: 53-2087-1 - 3-prime edge
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATACAC 
    AAGAGACCAA ATGTTGAGCA AAAGTTGAGT TACCTTAGAT AAATTTTTGA
    ATTGCTAAGA TATATCCGAA AGAAATTATC AATGGAATGT CTTCATAGGC
    AATTTTCTCA AATTAAAATG TCCAAACGGA GCCAAGAGTA ACCTGCATAC
    AAAGATACTA AATAACAGAG ATATTTGAAA CTAAAAAGTC ACCAAAAGAA
    CGAGGATATG ATCTGGACTT GTCAATGATC TCAGCCAAAA GAAAACTTTC
    AAATCCTGAG TATAAGAGAC AACACTCAAA ACTATCTTGC CATGAGAGTC
    TCGGAACTGT CCAAGTCAAC GTTCATTTCT TCTGATTCCA AACCTCGATT
    GTTACGTATC CTCGAGTTTT CACACAAGAT ACATTCTTTA AGCACTTGAA
    TAACCTCAGA AATCGATGGT CGTTTTGAGG AAGAAGAATC GGCGCATGAC
    ATTGCCAGAT CAAGAGCTCT CGAAGCAGAC TTAATGTCAT AATCTTTGCA
    AAGCTTTGAN AAGCAAGAAG AAAGTNGGTT AATGTTTCGG AGTCGAATAT
    GACTTGATGT CATGNGTATG ATTGAGTNTA AGANCTTAAA CCGCAACCCG
    NTCTTATAAG CCTAAGTAGN GTATACTTGT GAGAAGACNC ACAGCCGAAG
    ACTCATATGG ACTTTGGCTA CACCATGAAA GCTACCANNC NNGGGCCATC
    GCCCCGGGNN CCNTNNAAAN

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR