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53-2095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28903810 [Map]; Strand: w
      • AT1G76940.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G76940.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2095-1 - 5-prime edge 
    GTTTAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACA TGGAGATAGC GATCGTAAGC TGAACCGATA GTTCTAGTAT 
    CGGGAACATC GAGATCCTCA TCTCGCGGAT AATAACCACC AC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28858781 [Map]; Strand: w
      • AT1G76870.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: 374; Region: intergenic
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -6719; Region: intergenic
    Flanking Genome Sequence: 53-2095-1 - 3-prime edge 
    TTACATCAGT AAGCAACTAA GCATAATGGC ATGGCCTAAT TTGTTTCTTC 
    TTACTAGCCC AAACAACATT TTTGGCCCAA GCTTTAGGTT TCTTTTTCCG 
    CCTATGAAAA TAAAAGATTC TTCAATTACC TAAAAGCTCC AAGGCTAAAG 
    AGAGCCAATT TAGAGGTTGG AGTTTTGAAT AGTTTCTCTC AGTTCTTGTC 
    ACTGTNGTNG ATACTTACAG GACAATGAGG ACATAATCAA GCATAGAGAA 
    CAGAACCACT TTCTATAAGA ATATTACATC TGAAAATATG AAAATATTTC 
    TTACCTCAAA CTTTAAAGTT AAGCAACTGA TTAGATTGCC AATCATTGTT 
    GCAACTTTTT CTGATTAATT TCTTTGATCC CAACTCTATT CATCTCACTC 
    GACNA

AT1G76870.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76880.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 4096 Blast hits to 3293 proteins in 319 species: Archae - 0; Bacteria - 232; Metazoa - 1014; Fungi - 378; Plants - 799; Viruses - 55; Other Eukaryotes - 1618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76940.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.2); Has 631 Blast hits to 628 proteins in 151 species: Archae - 0; Bacteria - 4; Metazoa - 278; Fungi - 177; Plants - 131; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76940.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.1).
Link
InterPro Scan - TAIR