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53-2096-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24211967 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2096-1 - 5-prime edge 
    GAGANGCANA TCCNCATNCA AACTAATGGT AGTGTGTANT GTCAAGGGAT 
    TTGGCAGTAT CNTCNGANNG AATNAAGTGN ACACNACGGA TAAGATGATA 
    TTTGAGATCA AGAATACTGG TGATAATAAC CTGGTTCAAA CAATCAAGAT 
    TCACATTATC AGTGGATGAT TATTTATATC TCTCTCTCTC TCTCTCTCAC 
    CATCTCTCTG TCTTCNCTCA CGTGTTNNGG AGTTATCTCA ATATTNTTGT 
    GGTGTNNTGA ATNANTGTAA GAGTTTTTAN TTTCTAANAC TTNTCAGATC 
    TATACATNTT TGTTCTCTCT CATNTCTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212083 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2096-1 - 3-prime edge 
    TGCTTCTCCA ATGTCCCGAA TTTNTTCACA AGTGGATCGA CCAGAGTGAT 
    ACTCTCAGGG AAGTGCANGT CATAGTCTTT GANAAGNCGA GCTGGGATNA 
    GCTGCTTTAT GAAAAAAAAC ATCTTAAAAA CTCACAACCC ANCGATGTTA 
    AATGAAAAGC TCTTTCACAT TCANTTTTTA CTTACNNGTT GGCTTTTCTT 
    CTTCGGATTA AGGATCAGAG TNNAAGATGG GTNCTCACNA TCATCCNTAT 
    ACTGTCTTTC ATCTTCATCA TCATCATCAG CCTTAGCATG ATCTCTAGAA 
    TCAAAAGCCT CAACATAATC ATCATCTTCA ACAGGAACAT CATCAGCATC 
    ATTATCAACA TCTT

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR