1. Home
  2. Mutant Lines
  3. 53-2112-1

53-2112-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239290 [Map]; Strand: c
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 2759; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 865; Region: intergenic
    Flanking Genome Sequence: 53-2112-1 - 5-prime edge 
    TCCANNNTCC TATGCTTTGC GTATACNTCC TNGTNTTCGG TTCANNTCAC 
    NNNANAAGGG GGGGAGTGGG GTCCGTATAT CCATACTCCC ACTTCAATTT 
    TAAACTCTCG TTTCGGTTTA AATTTGAACT TCNATTTTTC TACTTCAAAT 
    TTTNTTGGAA TTTGATTTCT AAATCTTTTT ATTTTGAAAT ATTTTAACGG 
    GCGACGGCCT ATTATTTTGA AAGTTTCATT TACACCGCTT CGGTTACAGC 
    GCGCTATATA AATATTCAAN ATAANAATCT GCTCGAATGT TTTTCCGAGC 
    ANACTATGAA TTCTATCTTC TGAAACCCGG TTATACTTAA CACCGGTGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239406 [Map]; Strand: c
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 2875; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 749; Region: intergenic
    Flanking Genome Sequence: 53-2112-1 - 3-prime edge 
    NCANAGAATG CATATATATG ATTAAGCTGT ACTTGTTAGA TTATAATAGA 
    TAACACTTAT CTTATTGGTT TGGACATAGA GATGATGATA TCTACGGCAT 
    GGACGATCTG AATCTCTGAG ATTGTAAACG TCGTTGTATG AAAATCTACA 
    TTTAAGATGT TGTTCGTTAG AGGAGATCTC ATCTTTGCGT AGAAAGAGAG 
    AAGCAAGGAT GAATGCTTGT GATATNAGTG AGAATGTCAA TCAAGCTTAA 
    TTAATATGTA AGAAAGTAAT TGAACTTATC TTTTATGAGG GAGGTCGTCG 
    AGACAGAATT GGAGATCGCA TCATTGATGA ATGAGTGGAA ACCTTGAGCG 
    ATTGCTAGTG ATGATCCANT GTCACTTGTT GGTGTAATGT ATTTCCTTTT 
    G

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR