1. Home
  2. Mutant Lines
  3. 53-2124-1

53-2124-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2769142 [Map]; Strand: w
      • AT3G09060.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -712; Region: promoter
      • AT3G09070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2124-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT CCTCGGCCCT CCTCCTCCTC CTCCTCCATT 
    CCTCAGCTCC GGCCATGACT CCGATAACGA TCTCTCCACC ATTCCACCGT 
    TTAATCTCCT ATACCTATCC TCTTCCTCCT CCTCCTCTTC CTCATACTTG 
    TTAACACTCT TCCTGTAAAT AAGTCCTAAA ATGCTCCACT TCCCCCACCG 
    TCTCGACTTC TTGTTATTAT CGTTACTATT CACTTTCCTA TCGCCGATCA 
    TCATCGCCGG TTCCCGGAAA GATCCGTTAT CTGCCGTCTC CACGGCGTAG 
    TTGTTGTTAT CTCTCAGTGA TCCTGAGTAA GCGTCAATTG ATATAGCCGA 
    CGACACTGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2769081 [Map]; Strand: w
      • AT3G09060.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -651; Region: promoter
      • AT3G09070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2124-1 - 3-prime edge 
    GGAGTAATAG CAATGTGAGC TGGAGGAGTT CCGGAGGTGG ATCAGCGAGG 
    AAAGTCAACG GATTGGATAG GAGGAATAAG AGTTCAAGGT ACTCACCTAA 
    GAATGGGGAA AACGGAATGT TGAAGTTTTA CTTTGCCACA TATGAAAGCT 
    AGCCGGAGAA TGAGCGGTAC AGGAGGAGCA GGAGGTGGCG GCGGCGGAGG 
    GTGGGCGAAT AGTCACGGGC ATTCTATAGC GAGGAGTGTA ATGAGGCTGT 
    ATTGATCAAC AAAATTGTTC ATTGGATGGT TTAATTAGCT CTATGAAGCT 
    GAACCTTTGT TTTTAGTATT TCGTTGGTTT AGGTTTAATT TCGGTTCAAT 
    TGGTTTACTT TGTAATGTTA AGGAGGGGAT GCATTCTCAA ACGAATCACT 
    TGTTGTCGTT GTCTATTTTA ACCGGAATAA ACCGCCATTC GACCAGCTAT 
    ATTTTTGGTT CCAGGCTTCC CAATCAACAC CTAAATTTTT TCCAATGATT 
    AACCAAATTT TGATTAGTTA ATTTTCATTG GAACAAATAA ATTGAATAGT 
    CTGATAATTT TGTTAGTTAA CCTAAATTAA AATTTTAAAA TCGAAAGAGA 
    TTGTTGACTA ACTATAATCA ACAAAGAGTT TATTACTTCA CTTCTAATTA 
    AAGGCAAAAA GCCCAAAACA TGCCGGAGAA ATAACGTTCA CCAAAAACTC 
    TCACATGGGT CG

AT3G09060.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF740)
Computational Description
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G01170.1); Has 844 Blast hits to 758 proteins in 136 species: Archae - 0; Bacteria - 50; Metazoa - 319; Fungi - 62; Plants - 144; Viruses - 44; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR