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53-2140-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3967292 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -1656; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 21557; Region: intergenic
    2. Chromosome: 4; Position: 3967648 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -2012; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 21201; Region: intergenic
    3. Chromosome: 4; Position: 3969072 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -3436; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 19777; Region: intergenic
    4. Chromosome: 4; Position: 3970420 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -4784; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 18429; Region: intergenic
    5. Chromosome: 4; Position: 3970776 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -5140; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 18073; Region: intergenic
    6. Chromosome: 4; Position: 3972022 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -6386; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 16827; Region: intergenic
    7. Chromosome: 4; Position: 3974482 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -8846; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 14367; Region: intergenic
    8. Chromosome: 4; Position: 3975738 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -10102; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 13111; Region: intergenic
    9. Chromosome: 4; Position: 3976805 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -11169; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 12044; Region: intergenic
    10. Chromosome: 4; Position: 3985453 [Map]; Strand: c
      • AT4G06708.1 - [+] show detail - transposable element gene
        Distance: -19817; Region: intergenic
      • AT4G06710.1 - [+] show detail - transposable element gene
        Distance: 3396; Region: intergenic
    11. Chromosome: 4; Position: 3999002 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -1247; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 18246; Region: intergenic
    12. Chromosome: 4; Position: 4000069 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -2314; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 17179; Region: intergenic
    13. Chromosome: 4; Position: 4000247 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -2492; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 17001; Region: intergenic
    14. Chromosome: 4; Position: 4000959 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -3204; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 16289; Region: intergenic
    15. Chromosome: 4; Position: 4001493 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -3738; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 15755; Region: intergenic
    16. Chromosome: 4; Position: 4002559 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -4804; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 14689; Region: intergenic
    17. Chromosome: 4; Position: 4003625 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -5870; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 13623; Region: intergenic
    18. Chromosome: 4; Position: 4004341 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -6586; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 12907; Region: intergenic
    19. Chromosome: 4; Position: 4005408 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -7653; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 11840; Region: intergenic
    20. Chromosome: 4; Position: 4006478 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -8723; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 10770; Region: intergenic
    21. Chromosome: 4; Position: 4007546 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -9791; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 9702; Region: intergenic
    22. Chromosome: 4; Position: 4009146 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -11391; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 8102; Region: intergenic
    23. Chromosome: 4; Position: 4009503 [Map]; Strand: c
      • AT4G06716.1 - [+] show detail - transposable element gene
        Distance: -11748; Region: intergenic
      • AT4G06718.1 - [+] show detail - transposable element gene
        Distance: 7745; Region: intergenic
    Flanking Genome Sequence: 53-2140-1 - 5-prime edge 
    GGGAATAAAC TAACAAAATC CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCG ACCTAGATCA ACAGCAGATA AAGATGCAAG 
    CTTCCATGNC GGGCCNTAAG NCNNTCAGAG CCCTATNGCT NNGNGTNTNN 
    NATCAAGGAT ACNNTTCTTA CGCCTGTAAN ATNCGGTTGC AGGTTTTAAG 
    TGCGTATANN NNATCATNCN CATGAGATGT AGTGATNTTG AACTNCAAAA 
    CACAAACCAA CCTNCTTCTT GNTNTNNAAN NCTACNAGCC CGGGGCCGTG 
    GACCACGNNN NCCNNACAAA GACTCATATG GACTTCAGCT AAACCATCAA 
    TGCTTTGAGA AGCAAGAAGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17178327 [Map]; Strand: c
      • AT2G41220.1 - [+] show detail - glutamate synthase 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2140-1 - 3-prime edge 
    GTTTTGACTT TTGCACTTTT AGTTCTGGTG TGTAAATATT GGGTATACTT 
    AAAAATTTTC ATTTGCAAGA GGTTTAGTTA TGGACGTTTG TTTTTATTTT 
    GCGGGGTTTT AATTTTGTTT TGCATCGTCG CAGGTGGCTT ATTTGGAAGA 
    TATAATATCG GAAAGGGGAG CATGTGGTGT TGGGTTTATT GCAAACTTGG 
    AGAATAAGGC TACACATAAG ATTGTAAATG ATGCTCTTAT AGCACTTGGT 
    TGTATGGAAC ACAGGGGAGG TTGTGGTTCT GATAATACTT CTGGTGATGG 
    TTCTGGTTTG ATGACTTCCA TTCCTTGGGA TCTATTTAAC GAATGGGCTG 
    AGAAGCAAGG AATCGCTTCT TTTGATAGGA CGCATACNGG T

AT2G41220.1

Model type
Protein coding
Short Description
glutamate synthase 2
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root.
Computational Description
glutamate synthase 2 (GLU2); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: oxidation reduction, nitrogen compound metabolic process, glutamate biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 1 (TAIR:AT5G04140.1); Has 17295 Blast hits to 17192 proteins in 1999 species: Archae - 278; Bacteria - 5572; Metazoa - 117; Fungi - 161; Plants - 174; Viruses - 0; Other Eukaryotes - 10993 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06708.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.9e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06710.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT4G06716.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37015.1)
Link
InterPro Scan - TAIR

AT4G06718.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
pseudogene of unknown protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR