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Mutant Lines
53-2146-1

53-2146-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 18358707 [Map]; Strand: c
- AT4G39460.2 - [+] show detail - S-adenosylmethionine carrier 1
  Distance: 0; Region: intron1 (5UTR)
- AT4G39460.1 - [+] show detail - S-adenosylmethionine carrier 1
  Distance: 0; Region: intron1 (5UTR)

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT AGCTTTACTT GTTTGGTTTG GGATTTCTTC 
TCTGTTTTTT CTTGGTGAAT TTTGCGTTTC GCTTAAAAAT GAGTGAAATT 
GATTTGGTGA AATTAGGTCA GAGGCGTTTC TCATGGCTCC TCTTACTCTC 
TCCGTTGATG TGAAGAGCTC TTCAGCGACC TCTCATGGTA AATTCTCTCT 
GTCTGTCTTC ATTATTGACT CTGAATTTTT TTCGCGTATT GGTTATGAAA 
AGAGATGTAT TTGATAAATG CTATTGTTTT CGCAGATGTT TCGAAGAGGG 
TAATGCAGAG TCCACAGCTC AAAATAAACA AAGGCTTTTT TGCATCTGTT 
AATACACAAG AAGATAAACC CTTTGATTTC TTCCGCACTC TCTTTGGTTT 
GTGTATATTT TGTCTTTTGG TTCATTTGCA ATTATTATTT TATGAATCTC 
ATGTTCTGAC TCATATACAG TCCTTGTATC TGAAAAGTAA TTTCTTTTTT 
TATTGCTAAT AGTTTGGCAT TTTTGCTTTG AATCGGCAGC TTCAGGTGTC 
TAAGTCTTGT TATTCTTATG TTTTGGTTTT GATGATGCAG ANGGGTTTAT 
AGCAGGANGT ACAGCTGGAG TTGTAGTTGA AACAGCTTTA TACCCAATTG 
ATACTATTAA GACTAGACTT CAGGCAGGTC AACNAACTTT AAAT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 20280798 [Map]; Strand: w
  - AT5G49870.1 - [+] show detail - Mannose-binding lectin superfamily protein
    Distance: -8250; Region: intergenic
  - AT5G49880.1 - [+] show detail - mitotic checkpoint family protein
    Distance: -1367; Region: intergenic
2. Chromosome: 1; Position: 30251919 [Map]; Strand: w
  - AT1G80460.1 - [+] show detail - Actin-like ATPase superfamily protein
    Distance: -2666; Region: intergenic
  - AT1G80470.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
    Distance: -4147; Region: intergenic
Flanking Genome Sequence: 53-2146-1 - 3-prime edge
```
GATCTTGCGT CTTAAACCCC TTTAGCGAGG GCCTTATAGT ATTCCCGGAA 
GAATGACATT TTTGTATTTG GGCCAAAAAG GGCCTGTATA NTAGCCCATT 
AGCCTCAAAA GTGGGTNNAG AGGCCTCATG NTTGGATAGC TCACTCACAC 
TCACAGTGAA AAAATCGAAA GAGCTTTTGA GTTTTGACTA GTCGATCGAT 
ATCGTCCTAC TATATTATTT GGGAAGTACA TTTTAAATGT AACCTTAATT 
TTTGTAATTA ATTACATGAC AATGCCATTA GAAAAATTTA ATCAAAAACA 
AAATCTTTTA ATGACATCAT TAAGATTACC AAAATCATTT AACGACAATA 
TTCATCTCTT AATTATAG
```

AT1G80460.1

Model type: Protein coding
Short Description: Actin-like ATPase superfamily protein
Curator Summary: Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.
Computational Description: nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 17039 Blast hits to 17024 proteins in 2439 species: Archae - 160; Bacteria - 12245; Metazoa - 663; Fungi - 209; Plants - 115; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80470.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G16930.1); Has 1942 Blast hits to 1904 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1942; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39460.1

Model type: Protein coding
Short Description: S-adenosylmethionine carrier 1
Curator Summary: Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.
Computational Description: S-adenosylmethionine carrier 1 (SAMC1); FUNCTIONS IN: S-adenosylmethionine transmembrane transporter activity, binding; INVOLVED IN: transport, chloroplast organization, mitochondrial transport, S-adenosylmethionine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39460.2

Model type: Protein coding
Short Description: S-adenosylmethionine carrier 1
Curator Summary: Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.
Computational Description: S-adenosylmethionine carrier 1 (SAMC1); CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1).
Link: InterPro Scan - TAIR

AT5G49870.1

Model type: Protein coding
Short Description: Mannose-binding lectin superfamily protein
Computational Description: Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G49850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G49880.1

Model type: Protein coding
Short Description: mitotic checkpoint family protein
Computational Description: mitotic checkpoint family protein; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint (InterPro:IPR008672); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR