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53-2149-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22270538 [Map]; Strand: c
      • AT5G54820.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2149-1 - 5-prime edge 
    CCCCAGAGTA CTTGAAGCTG TGTATACGAG GCAGCTCAAA GGCACATTGC 
    ATGTAACTGA AGTCTGAATG CTCAATGACT AGCTCTCTGA ACTGCCCGGC 
    CATCGACGTG ATATCAACGC CCCAGCAATT TTTGATACTT AGACTCTGGA 
    GGGAAGGAGA TTTGGATAGT AAAGAGTGGA GGTTTTCGAG TCTGACCCAA 
    CCAATAGAGA GGCTTCTTAG CAATACCGGG TTTACGAATT TCGAAGGATC 
    AAACTTGCAC CCGTAGATCT TCAGTGACTC CAAGGTTGTT AGACTGTAAA 
    CGCTTTTAGG CAATGTATAA ATAAAATGAC GATATGATAT ATCACCATTG 
    CTTCTCCAAG AGGGGTTTGA CAAATCAACA ACTAAATTCT TCACTCGTTT 
    GGAGACAGCG TATTCGATCA GAGCGTCGAT CTTATCCTCG AAACCCACCA 
    GATGGGAGAA ACAAATCTCG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22270654 [Map]; Strand: c
      • AT5G54820.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2149-1 - 3-prime edge 
    CCNGGGGAGT TGTGACNAGT TCTACTTCGA CGTAATGNAT GTGATCATAC 
    GNGATGTGTA CTTGGATTTT GGAGNANANC GAGNATATGA NCTACANAGC 
    CANTCGTCAA GAAGATNGGG TGANGTTNGG TCCCGTATCA TTAAGNACCT 
    TAGANCANCT GAGACTTTAA CTGTCTGCCC TNATATCCTC CAGGTATATT 
    TAAGTGTTCA CATTTTTACA TTACATTTTT ATAGTAAATT ATAAGATCAT 
    TTAAGGGTTC TTGAAATATT TGAATTCTCA CGATATAGTA GTAGTAGTAG 
    TTGTTGTTGG AACTAGAATA GAATTATCTA CCNCA

AT5G54820.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G56400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR