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Mutant Lines
53-2153-1

53-2153-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 25260059 [Map]; Strand: w
- AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
  Distance: -1378; Region: intergenic
- AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
  Distance: 2120; Region: intergenic

GACATGACAG TTTTAGATTA GAAGCATATG CATCTGACGG TAGGATAANA 
ANAGTCTAAA NTNGGGAATT AGTAAATATA CTTGTATGTT GGAAAATGTT 
AAAAGTGGTT GACGATGAAG TAATCTTGTT ACGAAAGAAT TCCCCCTTGG 
GCCTTANNTN ATCCTTGAAG AAAAGAGGTT ATTTTTAATC TGTTTTTATT 
TTTTGGTCTT TGATAAATTC TCTTTTTTTG TAAGTAAAAG TTTCCATCTT 
ATTCGCCCTT CAATGTATAA TTAANTAACC TTCATAATAT AATATATATA 
CTATATATAN GTTAGAGAA

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 25259938 [Map]; Strand: w
  - AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
    Distance: -1257; Region: intergenic
  - AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
    Distance: 2241; Region: intergenic
Flanking Genome Sequence: 53-2153-1 - 3-prime edge
```
GTAGTACTCA GTTCAAAAAA GAATGTGANG ATTTAGGACA CAAAGTAAAC 
ACGATCAACT TAACGAAATG NTAATATAGA TGTCATGTAC GGANATAAAA 
TGATTTCANC NATGATNACA ACATTTTTTT CTTAACNTAT GATANTAAGA 
TATACGTAAG TNCCAAAACT GAATCAGCTG AAAAAGACAA TAAGCTTAAA 
TAATCGGTTG TTATGTTAAA AGTATTATTG CGACTAGCAA AATTACTTGA 
TAGTATNATC TACCCCCA
```

AT5G62940.1

Model type: Protein coding
Short Description: Dof-type zinc finger DNA-binding family protein
Curator Summary: HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Computational Description: HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G62950.3

Model type: Protein coding
Short Description: RNA polymerase II, Rpb4, core protein
Computational Description: RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
Link: InterPro Scan - TAIR