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53-2164-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30033520 [Map]; Strand: c
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: 0; Region: exon2 (5UTR)
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: 0; Region: exon2 (5UTR)
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: 0; Region: exon2 (5UTR)
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 53-2164-1 - 5-prime edge
    GCCACAGGGC TGGAGATGGA TCTGGTCCGG TGATTTCTGA AATTTAAGTC 
    GATCGAGTTT CCANATATAT CTCTCAAGTA NAGATGGCTT GGTTCANTGG
    CAAAGTTTCT CTGGGAGGAT TCCCANATCT CACTGGCGCT GTCAATAAAT
    TCCAGGAGAG CGTTAAAAAC ATTGAAAAGA ATTTCGACAA CGCCCTTGGC
    TTCGACGACA AGTCCGATTC TGCCGCTGAA GGTGTTCTCT TCATCTCACT
    CGACNNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30033637 [Map]; Strand: c
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: 0; Region: intron1 (5UTR)
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: 0; Region: intron1 (5UTR)
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: 0; Region: intron1 (5UTR)
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-2164-1 - 3-prime edge
    ANNGCTTCCA GAGGCAAAAC AATCAAGCAA TCGAGTTTAG ATCCCAATTA 
    CNTCACTGAA TCAGTTATTN AGACGAGGCG ATTGGATAGN GCAGAATNGA
    GCTAATTGGG ATCATCAATG GCTTACGAGA AGGAGATGCG TCGTCCTTGC
    CGTCGTGATC GAATTCCGGA GGAGAGAGAC CCACCCCTAT GTGTTTTATG
    TTTTTTTAGA TCCAACAAAA TCCAAATCCT TTTTTTTCCC TCGGCCACCG
    GCGATCGAAC GGCGTCNTTT CGCGGATTAN AAAAACGTTC TGTCTTGATA
    TCATTTACTT CATTCTAAGC GGCTTTGGTC TGAATTTTTT ATATACAAGG
    CCTGTCTCCG TTTTTGTAAA GGGAAAACAG TAGGATCCAT TTTAGCCTCT
    GTAAGTAACA ATAT

AT1G79830.1

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.2

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.3

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR

AT1G79830.4

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR