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53-2167-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17951395 [Map]; Strand: w
      • AT4G38330.1 - [+] show detail - Integral membrane protein hemolysin-III homolog
        Distance: -75; Region: promoter
    Flanking Genome Sequence: 53-2167-1 - 5-prime edge 
    GGGNAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCGC TGAAAACAAA AAGCTCGGCC ACTGTAACAA 
    CAAAAATGGA GACGACACAA CTTGGAAAAG AAATCAACTC GAAATAGCCA 
    AGAGAATGTT CGAAAACCCT CTCAAATCCG ATGCTTCCTT TGATTCCAAC 
    CTCCAAAAGC CCATCTGCTC AAATCTTCAT TTCGAGGACG AGGACTCGAG 
    GAGTATTACA AGGTACCTCT ATAGAATCAA TGGCTTCCAT GGTTTTTGAA 
    ACTTTACTTC TAATAAACAC CATTGTAATG TCTTGTTGTG AAATTGTGTA 
    AGGAACAAAG GATAGTGAAA GCTGAAGAGT GGGCAGAGTT TTTTTTTGAC 
    TAAGTGGCCT CTGTTTTTGA TTCTTCAGTG GTCAATTTTG TGATGGGATT 
    TGATTGAAAT TGGAGAATGA TTTCATGAAA TCTCTTCGGG CTGAGGTTGA 
    TTCATGACTC TTTCATTTTT CTAGTGTCTC ATTGATGATA GACATAAGAA 
    GCACTCAGAT GTTGGTTTTT GTTTTCCATA CTTAAGGCCA TAGAGAGTGG 
    TGAATTGGAG GCAATCAAGC CTTTGCCTTG GTACCCTAAN AATCTTCACT 
    TTTCTAGNGT CTCATTGATG ATAGACATAA NAAGCACCAT TGCTGAATCA 
    TATCTGTTTG GCACAGTTCT AGTTGACCAT CCATAAGNGG ATTATTCGNG 
    CTGNTGCTTA AGCCNTTTTT TN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16980380 [Map]; Strand: c
      • AT2G40700.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 822; Region: intergenic
      • AT2G40710.1 - [+] show detail - Haemolysin-III related integral membrane protein
        Distance: 563; Region: intergenic
    Flanking Genome Sequence: 53-2167-1 - 3-prime edge 
    AGCGATGGGT TTACATTGGT TTTGAAATTC AAATTGATCT CGGTTCGGTT 
    TACTTTGGTT TAGAGANGAA AACAANAAAA AATAAAACAC GCGGTGGGTT 
    TTTGAAAATN AGGTGCNTGG ATCAAAAAAA GAATNATTTT TGTGGATTAA 
    CCCCTTTANA AATCGTAAAC ACNCNCTCAA CGCNACATGG GTGAAANTGG 
    CTGTGAAATC TACCNATTGG TAAAATTGGG GTATNAATTG NANCTCTCTC 
    ATTGGCTAAA AAAATAAAAA TANTAGGGAA GCTCCNCCNC TCATATATTG 
    AAAACAATAA TTAACACTGT NTTCTTAACC ACTACTAGT

AT2G40700.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 40440 Blast hits to 37904 proteins in 2977 species: Archae - 739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486; Plants - 2481; Viruses - 5; Other Eukaryotes - 6804 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G40710.1

Model type
Protein coding
Short Description
Haemolysin-III related integral membrane protein
Computational Description
Haemolysin-III related integral membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 1248 Blast hits to 1248 proteins in 203 species: Archae - 0; Bacteria - 18; Metazoa - 711; Fungi - 269; Plants - 169; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38330.1

Model type
Protein coding
Short Description
Integral membrane protein hemolysin-III homolog
Computational Description
Integral membrane protein hemolysin-III homolog; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: Haemolysin-III related integral membrane protein (TAIR:AT4G38290.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR