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53-2184-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24332976 [Map]; Strand: w
      • AT5G60520.1 - [+] show detail - Late embryogenesis abundant (LEA) protein-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2184-1 - 5-prime edge 
    ACTCNANNAC AAGCACGATA ATAGTTACAA GAACTCGCAA CATTTTGTTT 
    GTGGTTTTGA AAGAAACAGT GTTTTGTTGT ATATTTCTGT GGATTTTGAT 
    TTGATAGAAG TGGAGGGAGT GTTCTTNTAG ACCAGANAGG CTGGAAGTNA 
    GCAGCAGAGA CCGGCTTAAT TNACGGTCCA GAGTTGATCA AAATCACATG 
    AAGAATCGAA GACCGTGTTA GAAACAGCTT CGACTTTGTT TATTAAATTC 
    TTTGGGAGAA CCACCACTAG CTTCAAATAT TAAGTTCTTG ACATGAATAA 
    TTAACAAAAA TTGAAAATCT GCATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24332854 [Map]; Strand: w
      • AT5G60520.1 - [+] show detail - Late embryogenesis abundant (LEA) protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2184-1 - 3-prime edge 
    TTCCTCTGTT TCTGCNGCAG AGAAAGGGAA GAAACTCAAG AAAGGTGCTT 
    ATGATGCGGC TTCAACGAAC TATAATGTTT TGTATCCACT TGGCTCGGGC 
    CAAGAGCGAG TTCAATGCTT GGCTAGAGGA TCGTGTANCC ANAAAATCCT 
    CACTTGTCCT AAGGAATGCC CCGAGAGAAA ACCAAAAATG AACAAGAAGA 
    AAAAAGCTTG TTTCATCTCN CTCGAC

AT5G60520.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) protein-related
Computational Description
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR