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53-2207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24622438 [Map]; Strand: w
      • AT5G61200.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon7 (3UTR)
      • AT5G61210.1 - [+] show detail - soluble N-ethylmaleimide-sensitive factor adaptor protein 33
        Distance: -861; Region: promoter
    Flanking Genome Sequence: 53-2207-1 - 5-prime edge 
    ATGAGTCTCT AAAGCAATGT TGAAAGCTNT GNTCTTTNAN GTTCAAAANT 
    CTCANTAATT GACTCTATTT GATGGGCCTG TAATGAGCCT AGGTCAATAA 
    GGCTGAGTTT ATTTGATGGC CCGTTTTTCT CTCTTTTATT ATTCTTCTTT 
    TTCTTGTGAA AATAAAGAAA TCTTGAAGCG TTGTTGTATC ATCATGTATG 
    TGCAGAGTCT AGTAACCTTG TTGTTGATGC AAAGGGATAA ATGAATGGGT 
    CAAGGAAAAG AACCTGTTGT CTTTATTGTT AATCAAGACA CTTGTAGATT 
    TGTTGTCTAA C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24622291 [Map]; Strand: w
      • AT5G61200.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 53-2207-1 - 3-prime edge 
    CCACTCATGT CAATTTCTCA AGATCTCTAC ATGTTGCTGA AGGCGTAATT 
    AAACACTTAG AAGCCACATG AAGAAGCAGT TTCACTCTTG TAAAACTCAA 
    TTTCCATATA TAAACATAAT CACAGGGATG AAATCTATAT TCCAATTTCC 
    AATCAAATTG GATTATGTAC ACTTTAAATA CATAAGAATT CAAACCTTAT 
    AGCTTAAAGG CTTATTTGAG GCATTAACTG TGATTTCAAG TTTAACTCGA 
    ACCTTAGCTG GTTTATACAG CAGGAAGAGG AACTAAGCAA GTTGAGGACT 
    TGTTCNTCTC AC

AT5G61200.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G07890.3).
Link
InterPro Scan - TAIR

AT5G61210.1

Model type
Protein coding
Short Description
soluble N-ethylmaleimide-sensitive factor adaptor protein 33
Curator Summary
membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation
Computational Description
soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (SNAP33); FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: vesicle-mediated transport, response to other organism, cellular membrane fusion, response to mechanical stimulus, cytokinesis by cell plate formation; LOCATED IN: integral to membrane of membrane fraction, plasma membrane, chloroplast, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNAP-25 (InterPro:IPR000928), Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (TAIR:AT1G13890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR