1. Home
  2. Mutant Lines
  3. 53-2210-1

53-2210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19637911 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2210-1 - 5-prime edge 
    TCNACAAATC CACACGTCCA ATTGGATTGC CNANATCAAC CACGGACTCC 
    CAGTGGAGGA CNTCGTATAC CTGCCTTCCG GTGCAATGAT CGCAACCGCT 
    GGTGGCAACA GCGTCAAGGT ATGGGATTTG ATCGGAGGCG GGAAGATGGT 
    TTGCTCCATG GAGAGTCNCA ACNAGACCGT CACGTCTCTC CACGTTGCGA 
    GAATGGAATC GGCTGANANT CGACTTGTGA GCNTTGCTTT GGACGGATAC 
    ATGAAAGTCT TCGATTACGG GAGAGCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19638027 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2210-1 - 3-prime edge 
    CTCTGGCGTC CCACACCTTC ACCGTGTGAT CGTAAGAGCC TGTTACCAAC 
    ATTGAATCGT TGACGGGCGA GCAATCACCG CAGCGGACAT AATCCTTGTG 
    GCCTAGCAGA TCTGAGATGA CTGTTGCTCC GGCGACATCC CAGTACTTGA 
    CGACTCCATC GTCGCCTCCG GAGACCAAGT GGAGCTTGTC CTGAACTGGA 
    TACTTGACGA ATCGAGCGGG GGCGCTGTGG GAGCGGAGAG TACGGAGAGC 
    CATTCGTTCC TTGATGTCGA ANACCTGGAC CACACCGGAG AGATCGCATG 
    CCGCGAAAAG AGCTCCGT

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR