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53-2212-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1531594 [Map]; Strand: w
      • AT1G05260.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 155; Region: intergenic
      • AT1G05270.1 - [+] show detail - TraB family protein
        Distance: 47; Region: intergenic
    Flanking Genome Sequence: 53-2212-1 - 5-prime edge
    TCTGGATAGA GGATCCAGAT TGTTTAATTG CTTTTAGTGG CAGTTTTGAA 
    ACGAGTATTT TCACCTACCC CTAGCTCAAA CTCGGATTAC TTCCAACTAT
    CTAAAGAAAA TACCGAAAGA CCAAAAAAAA ANCTTTATTA TTTNCATCAG
    TAAACNTNCA GAANTGACAA AAAAGAAAAA AAAANAAAGA NTTNCCGATT
    NTAAAATTTA TTNNATTTTG TATCATNCCT NCGTANGGCN CAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1531473 [Map]; Strand: w
      • AT1G05260.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 34; Region: intergenic
      • AT1G05270.1 - [+] show detail - TraB family protein
        Distance: 168; Region: intergenic
    Flanking Genome Sequence: 53-2212-1 - 3-prime edge
    AGATGGCATA TAATTCTATC TACAAAATGA CAGTGTTACT ACTCAAACCA 
    ACTAAAATGT CATGATTCCT ACACGACAAG CCAAATATGT TAAAAAAAAA
    GCAGTAAAAT CTTTTTATTT CTTTATTGAC GAANTCTGTA ACAAAATCCA
    TACACACAAA TCCCAAAAGG CCACATCATA AATTCACAAT CATCCTTATT
    AATTATTATC ACAACTACCC CCACAAGGTC CCAAATCTTT TACATTTCCA
    CCCCTTAACT ATTTGCAACG GAACATTGCC TCCTAACCAC TCCAGCTGAA
    CCAGTCTTGA CATTGATCCG AC

AT1G05260.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
Computational Description
RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05270.1

Model type
Protein coding
Short Description
TraB family protein
Computational Description
TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1); Has 779 Blast hits to 750 proteins in 262 species: Archae - 153; Bacteria - 256; Metazoa - 121; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR