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Mutant Lines
53-2220-1

53-2220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23978693 [Map]; Strand: c
  - AT5G59460.1 - [+] show detail - scarecrow-like transcription factor 11 (SCL11)
    Distance: -294; Region: promoter
  - AT5G59470.1 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G59470.2 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-2220-1 - 5-prime edge
```
CNCNCAAGTN AGTATTNGCT ATCGTCCTTC ATCTCACTNN AANAAAGTAA 
CCGAGTAGCT TTGAAATGAN AGGAAGAAGA CAATCTTTCG CCGGAAACTC 
ACCGTTACGG AGAGATCCGA TTGCGCAGCT CAAGTCGATT CCTAGATAAT 
CCATTGTTTT CTCCTCAAGT TGCTTCCTTG ACTTTTTATG TTCAGCTGTT 
TTTCAGATTG GATTTGGTTG GATTCTTCAG ACATGATCAA ATANATACCA
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23978764 [Map]; Strand: c
  - AT5G59460.1 - [+] show detail - scarecrow-like transcription factor 11 (SCL11)
    Distance: -365; Region: promoter
  - AT5G59470.1 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
    Distance: 0; Region: intron1 (CDS)
  - AT5G59470.2 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 53-2220-1 - 3-prime edge
```
TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCTA 
CTTAATTCAA TCAATCAATC AATCACTATG ATTTTACAAC CCTAATATCT 
CTAAACTGAA TTGAACTTCT ATTGTTGTAG ATAATGAAAA TCGTGGACAA 
CAAGAGTGTA AAAGGCCTAA GTGTTGTAGC ATTTGAGCNT TGAAGTGATT 
GGTTACACAA TCTCACTTGC TTACTGTCTT AACAAAGACC TTCCTTTTTC 
AGCTTTTGGT GAATTAGCTT TTCTTTTGAT CCAAGCT
```

AT5G59460.1

Model type: Protein coding
Short Description: scarecrow-like transcription factor 11 (SCL11)
Computational Description: scarecrow-like transcription factor 11 (SCL11); CONTAINS InterPro DOMAIN/s: M-phase phosphoprotein 6 (InterPro:IPR019324); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59470.1

Model type: Protein coding
Short Description: Mannose-P-dolichol utilization defect 1 protein
Computational Description: Mannose-P-dolichol utilization defect 1 protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: Mannose-P-dolichol utilization defect 1 protein (TAIR:AT4G07390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59470.2

Model type: Protein coding
Short Description: Mannose-P-dolichol utilization defect 1 protein
Computational Description: Mannose-P-dolichol utilization defect 1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: Mannose-P-dolichol utilization defect 1 protein (TAIR:AT4G07390.1).
Link: InterPro Scan - TAIR