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53-2228-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799134 [Map]; Strand: w
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -481; Region: promoter
    Flanking Genome Sequence: 53-2228-1 - 5-prime edge 
    TATAGCTAGC AACATGTATA CTATTTCACT TTTTTTAGAG TTTTTCAACC 
    AATCAGAAGG CTGTATTTCA CTCCCACTCT CACAAAGTGA GCGTTGAGCG 
    CGTGAGAGCA CTTCTGTGGG TGTACCCCTT TGGAAATCAT GCCTTTTTTA 
    ATCTACGCAC TCCTCTCCGA AATCCCCATC GCGTGCAATT GTTTTTGTTT 
    TCTTCTCTAA ACCAGTGTAA ACCGAACCCA AAATCAATTC TAATTTCAAT 
    ACCAAGTAAA CCTAACCGAA AAATCAATTT CAATTTCATA TAAGAACTCC 
    ACTATCAAAT TAACAAATCA TATAAATGTA AGTCTTTAAG TATAATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 792239 [Map]; Strand: c
      • AT3G03350.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G03350.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2228-1 - 3-prime edge 
    TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    TCCTCCATAT TAGTTTTTCG TCTTCTTCTC TCAATCTGAT GAAAGTTGTT 
    GTTTTTAGGT ACAATTCATT CTATTCAAAA CAATTTTGAC GTCTCTCAAT 
    CCCATTTTAG ATACAATTGA TTCTATTTCA GGTTTTGGGG TTATTTCTCA 
    AATCGATTCC TGTCACCAAA ATCAAAATCT GAAAGCAAAT GGTTGATGAG 
    GATCACTTGG AAGATTTTGT CTGTGTTTGA CTATGGAGTT GCACATAAAT 
    GGTTAGGGAT CAGAGGAATA AGTTGACTCA GGAAGTTTCT TCTGCTTTCA 
    GCGGCAAGCT CAACATCCTT GTAAGTTCCC TTCTCCTGCT AAAGACATTT 
    GTTGTTTTCT ATGCTTTTTT TTATTGAATT TTCTACACTT TGGAATCTTC 
    ACCAATTTTG AAATTCTACA TATCACATTA GCTCGTATCC TTGCAAGTTT 
    CTTATCCGAT AGAACAATCT TCGAACCATT CTGCCACACT TTTATCAGGT 
    TACTATATAT GTTTGGTCTT AGGATTGAAT GGTTTAGACT TTTGGTGGTT 
    TTGCCTCGAA TGATCAGCTA TCTGTCTATT CAATACATGT AATGTGAAGG 
    CTTACGTTTT TTTGTTGAAC CATATAGTGA TGCTTGTTGA TCTCATGTAA 
    GTTTTCCATC TATTAGGCAA GATCTGTTAT ATGTTAACAT AGTTAANATA 
    CCAGCACCGG AGGAAATCGC GTNACTGGTT G

AT3G03350.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03330.1); Has 56644 Blast hits to 56586 proteins in 3128 species: Archae - 370; Bacteria - 40229; Metazoa - 3300; Fungi - 2140; Plants - 1046; Viruses - 2; Other Eukaryotes - 9557 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03350.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03330.1).
Link
InterPro Scan - TAIR

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR