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53-2245-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24535206 [Map]; Strand: c
      • AT1G65920.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -5912; Region: intergenic
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: -3680; Region: intergenic
    Flanking Genome Sequence: 53-2245-1 - 3-prime edge 
    GACAAAGGTA ATATTTCTAG CTTTGTGAAG ACCTTAAACC ACTTATCGCT 
    ATATATTGTG GTAGTTGATA TAATCTTGTT TTGTTTCGGT TTAAATTGCT 
    ATTGAACAAA TAACCCATAC ATAAATATAT AAATGTTATG CGAAAAAATC 
    AATTATAAGT ATACATGGGA ATGAAATCAA ATCTGCTTAT ATGTGACTTT 
    GTATTTAACT AGTCGGAGAC AAGTCAGAGA AGTGCTTTCT ACCATGTCTC 
    TTAATGTTTG TCAATTAGGT CATACCACAA TGTCTTGTTT TCATTATCCA 
    TGTCCATGTG GCATTTATAA TAGCTGAATA AATCATAAAT AAATCCAATT 
    TTATGGGCAT GGATATGGCT ATAAGTAACT TAGAAGTATC GAAAGTCCAA 
    ACCAGATCTC ATTATGATAT ATTGTTTAAG ATTTTTGTGA AACAATTGTA 
    TTTTAGTAAT CAACTACTTA ACCTCATTGA TGCATCTCGC TACCATGCAG 
    ATTATGGTAC TAACACAAAT GACTACACTA AATTTACTTG TCAACTAAAG 
    CAATTCCTAA AGATAGTAAA GAGAGAACTA TATACAAAAT GTTTCCAGAC 
    AAAGACATGC AGTGTACTGA TTTGAGTTAC TTTTTAAGAC TTCCTTTAGT 
    TGTTGACTAG GACATATTTT TAGCTAAAAG ATATTTCTTT CAATACTAAA 
    AATATTTTGC CCAT

AT1G65920.1

Model type
Protein coding
Short Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65930.1

Model type
Protein coding
Short Description
cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary
Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description
cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link
InterPro Scan - TAIR