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53-2249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19830542 [Map]; Strand: c
      • AT5G48905.1 - [+] show detail - low-molecular-weight cysteine-rich 12
        Distance: -742; Region: promoter
    Flanking Genome Sequence: 53-2249-1 - 5-prime edge 
    CNNNGATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CGGCGAGACC ACGAAAACAA ATTGAGATGG 
    ATTGTTGATG TGTTCATGAT GCTATTTAAG ACGGGGTTAT GTGTACACGT 
    TCAGGTCAAA AGAAAAAAGA ATATCAAATT CTAAACTTAA ATTTTAATTT 
    TATCTAACCT ACTATTCAAA TTGTTTAAGA AATTACTCCG CTTACTCACT 
    TAAGAAACAA ATTAAATTTA GTTAAGATAA TTAGCATGTT CGTTTAACAG 
    TCGCAGCTGC AAGAACTGCG GCACAAATAA AAAGCCTGAG ATGATGTGTA 
    TTTGGGAAAA ATAAAGTGCC GCAGTTGCCG CAGCGATCAG AAAAAGAAAA 
    AGAAACAGTA ATTCCGTAAT CGCTGNNTAT ACTCTGNTGC TCNNCTTTCG 
    CNGGACCCTG TTGCNNCANN ANANCATGTN NCNCGACTNG NTGCAAATTG 
    NANNGCNAGT GATNTTTGTG TGCTNANTTG GATTNAGANT GCNNAANTGA 
    CCTTAAGTAC CAACATGCNG TGAAACTCCA TTGGTGTTTC TTCTGGAAAC 
    AGTGCACGAT AAGATGTNTA TNACTGNNAC NATTGGGGAT GCTATGACCT 
    ATANNATNGT GNCATGANNA CCGTAAAGCT CTAAANGAAA AAATTTNTAA 
    TGGTGCTNAG GCNAATTCCT TTAGGACCGC TCNAGCNCTN TTNNNNTTTN 
    GGGNGNGGGN GNNNCCCNNT TN

AT5G48905.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 12
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 12 (LCR12); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 21 (TAIR:AT4G29283.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR