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53-2260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9548324 [Map]; Strand: w
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2260-1 - 5-prime edge 
    GGGAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCCATAGCT TCTCAACCTT GTTGTTGCCT CTCACTGTGA 
    GGTCTTTGAG ATGTTCTGGG AGAAATTTAC TTGGATTACA TCTCCTGAGG 
    CAATCGAGAT AATCTAGTCC AGGGAGATTC TTGTTCCATA TACAATCTGA 
    TACCACGATC TCAATTCCAA GAGGGGAACT TTGCATTAAA ACCTCAGGGA 
    AGTTTCTCAA CCGCGGGCAT CCTCTGAGAT TGAGATACTC GAGAGAATCC 
    GAGTTCAGAG GAGTTGGAAA ACTCTCTAGC TCTTTGCAAT AAGAAATATC 
    TACTATCTCG AGGTTTATGG CTTTAGAAAG ATCTGGAATT TCTGTCAAAT 
    ATCTTGAACC ACGCATTATC ATCTTTTTCA GGCTTTCACG CAGCTGAAAA 
    CAACACACGT TGAAAAGCAT TTCAAAAAAA AAAAAAAAAN TTTTTAAANN 
    AANTTTTTTN NTTTTTTTAA NNAANTTTTT NNNAATTTTT CCCAAAAAAA 
    ANNAANTTTT TCCCNNGGTT NNTTNCCNAA ATTTTTTAAA NCNNTTGNTN 
    NCCGNTTTNN GGGCCNCCCA AATCCCCCCC CTTAAATTTT TGGGNCNACC 
    CCTTNNNGGG NAATTTTCCC CCCTTTACCC TTTTTTTTTN CNANGGNANN 
    NAANCAGGCC CNTTGGGGTT TTCCCCCCNG GNTTTCCTTT TTTTNCCCNC 
    GGGAAAGAAN CANAANTTNN NAAATTTGGA AAAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9548304 [Map]; Strand: w
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2260-1 - 3-prime edge 
    TGGGAAGGCG TCCAGGTACA CTGTTTATAT TATATAGCAT TTGCTGATTG 
    TAGTTTAACC TCTGTTATAA ATTTATCAAG TATAACCAAA ATTGTCAACA 
    TGGCGGTTTA TACATAGATA CATAATTATG TCTTGATTAT AACACTAAAC 
    ATATATAGTA TTGATAATAA TCAAAGCATA ACAATGTTTT ATCTTCTGTT 
    TCCAGTCGCT TGGAAGTCTT GTGAGGATGG ATCTGTCAGA ATGTGCAAAC 
    CTGACAGAAA TTCCTGATCT TTCCAAGGCC ACCAAGCTCG AGTCTTTGAT 
    ACTCAACAAC TGCAAAAGTT TGGTGATGTT ACCTTCTACC ATTGGGAATC 
    TCCAAAAACT GGTGATGTTG GAAATGAAAG AATGCACAGG GCTTGAGGTT 
    CTTCCTATCG ATGTTAACTT GTCATCTCTC CTAATCGTCA ATCTCAAAGG 
    GTGCTCAAGG TTAAGATTTT TCCCTCAGAT TTCATGTAGT ATTGAAAGAC 
    TCAATCTAAA ATACACCGCC ATTGAAGAAG TTCCCTACTG CATTGAGAAT 
    TTCCCGAGGC TCACGGTTCT AAGGATGCGT GGTTGCAAAA GGGTGAGCAG 
    ATCTCCTCAG ATTCCCAGTA GTATTAAAAA ACTCGATCTA GATGACACCG 
    ATCTAGATGA ACAAGTTCTC TGCTACGTTG AGAATCTCTC GAGGNTAACG 
    GTACTAAAGA TTCGTGGTTT CAAAAAGGTT GAN

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR