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Mutant Lines
53-2281-1

53-2281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 19828465 [Map]; Strand: w
- AT5G48900.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon5 (CDS)

NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCTA GAAATTCGTC CATGGCGCTC AACGAAAATT 
CCCCGCCACA AGTTCAAGTG TTCATCAATT TTAGGGGAAA CGACCTGCGC 
CAGAACTTTG TTACTCACCT CGACTAGGTC AAATAAAGAA CCGATCTTTC 
TTGACTTTTG ACTTAGTGTC AAACTATAAC CCTTATACTT ATAGATTACA 
GTTTCAACAA AATTCTTACA GCAAAAACTT ATGGGATGTT TCAGGTGACA 
AAGAGAGACT ATGCAGGGCA ATGGCAATGG AGGCATTGGA ATTGGAGATC 
AGAAGGAGAT C

3 prime edge [+] show sequence

Chromosome: 5; Position: 18346948 [Map]; Strand: c
- AT5G45280.1 - [+] show detail - Pectinacetylesterase family protein
  Distance: 0; Region: exon2 (CDS)
- AT5G45280.2 - [+] show detail - Pectinacetylesterase family protein
  Distance: 0; Region: exon2 (CDS)

ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTCACGTAT 
CTTGAATCCG CAGTAGCTAA AGGAGCTGGT AAGCAATAAT TTTATTTTCA 
AATGCTTATT AGGAATCAGG TTCGAGCATG GATAGTATGA ATAGATAGAA 
AAATCGAATT AATGATGAGG CTTTATGGTA AAAAAAAATA GAGCCAACAT 
TGGAATGGTC TTGAGTCAAG TTTCTAAAAA TCCAAAAAAA TAAATAGTGT 
CTTCCAAATT TCAAAATGGT ATTCAATAGA AAAGTTCATA ATTCTGGATA 
TTTCANATTA AAAACCTTTT TCTGTGTTTA CTCATGANAA TAACTTGGAT 
TTTAAATTTG GTTGATAAAA CCATTGTTAT AACTAATTAC CTACTATGTT 
TGACAAAGAT TAAAAAAAAC TAACTACTGT ACATATTTTA TATTTTCTGT 
AGTGTGTTTG GATGGTAGCG CGCCAGCATA CCATTTCGAG AAGGGATCTG 
GCTCAGGAGT GAACAATTGG ATCGTTCATA TGGAAGTGAG TATTATTTTT 
ATTTTCTCAT TTAATTATAT ATTATCATAA TAAATAATTA TGTACAAAAT 
ATGATGGTAT GAATTAAATA TGTATATAAT TATGTGAATA CGTTAGGGAG 
GAGGATGGTG CACTGATATA GCTACATGCG TTCAACGTAA AAGTACAATG 
AAGGGTTCTT CTAAGCTTCC ANCCCNGNCC GNAAGNCNCG CTNNNCCNTT 
NGNNNNNNNT NTNNNNNANG NANNNNTNTN

AT5G45280.1

Model type: Protein coding
Short Description: Pectinacetylesterase family protein
Computational Description: Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT4G19410.2); Has 552 Blast hits to 548 proteins in 96 species: Archae - 2; Bacteria - 42; Metazoa - 115; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G45280.2

Model type: Protein coding
Short Description: Pectinacetylesterase family protein
Computational Description: Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT4G19410.1); Has 566 Blast hits to 560 proteins in 97 species: Archae - 2; Bacteria - 42; Metazoa - 118; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G48900.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR