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53-2312-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75508 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -119; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -130; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -12; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -12; Region: promoter
    Flanking Genome Sequence: 53-2312-1 - 5-prime edge 
    TCTCTGAGGC TAACTAACAG GAAGGAAGCG GGAGAAGAGC AGCTGCAGAG 
    TCGCTCTTGT TCTAGCTGCT GCTGACTTTG GTGGACCAAC CAACTTAATA 
    TAATGGTTTG GGCCTTAGAA TGGTTTGGGC CTATACCGAG AGGCCCGGCT 
    TACCCAGAAA GAAATGCAGC AATAGTCAAT GCCACTGCCT GGAATTCGTC 
    GATCGAGCGA TAAGAAGAAG ACTGGAATTT TTTTGAGGAG GACTCTGCTC 
    CATCGCCGCC CGCCCTGTAA CCCACCGGAC TCAGTAAACT AGTCTGTAAC 
    ACAATATCTT CTATTTCAGA TAAGATTTAG CTTGGAGAAG AGCAAGTTCC 
    GAAAATGGAG GGGCGTCGTG TATAGATCCA CCACCCACAG GTTCGTAGAT 
    TCCATAACCT TGGATTGTGT TTTCTTTTTG CTTTCTCGGC GACAAATTCC 
    TCCGATTTTA GTGAACATGT CTCTGATTTT GGTGTCCTGT GGTGGATCTG 
    CCGGAGCAAG TCTTAAACCT TGACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75624 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -235; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -246; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2312-1 - 3-prime edge 
    CTCAGAGATC CTCGTTCCCC GATAATGGAT TTGGGAAAAC TGATCCAGCT 
    GTCTGCGCTG CTGTGCCCAT TTCTTCTATC ATTACACTTT AGAATCGCTG 
    GGGCCTCCGC CCACATCTAC TCTTCCCAGC CCTTCCACGA TGTCGGTAAT 
    TCTCTCCTCC TCTACGGTGG CAGCGAGGGC ATCTTCGCCT CTTCCCGATC 
    TTTAATCAGG TATATTCTAT GGATTACATT TTCAACTCTT TTGATGCTCT 
    CTACTCTACT CTACTCATCC TCCCTCCTCA CTGCAGGTTT GAGAACATCA 
    CTCTCTGGAG GACAATTACC GGTAAGGGCC ACCGCAGCAA TGGGGTTAGT 
    TCAAGCAGTG ATCTTTGAAG CCTCCGATCG TAACAATATC GGTGGTTCAG 
    CTTACGGAGG CCAAAGATCT ATTTGCTGCA CTCCAGATCT GGCCAAGCTT 
    CAAGGCTGTA GCAGGGTGAG ATCATTAGGA TTCCTTCTCC ACATGACCCT 
    CAATGGCCTA TCCTCTTACC TGTCCGCTTT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR