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53-2315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30085750 [Map]; Strand: w
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: intron3 (CDS)
      • AT1G79990.3 - [+] show detail - structural molecules
        Distance: -31; Region: promoter
      • AT1G79990.5 - [+] show detail - structural molecules
        Distance: -31; Region: promoter
    Flanking Genome Sequence: 53-2315-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TAGAGATCCT ACTAGACCCA GATTCAGATC CAAATCGCCA 
    ACGCGCACTG GAAGTGGGAT CACCACCACT GCGCTTCTTC TTCTTCGTCA 
    TCTCTGATCC CCCCTGCGAT CAGGGGCCAT CTCCGTCGAT AATCCGATCT 
    CCGGTTCAGA CATTCGTTTG GACTTGCAAA GATGGTGAGT GACATGATCT 
    CTCAGTTTCT CCATAGATCT ACCTCTGAAT CCTCTTTCAA TTTTTTACTT 
    GAAATCTCAT TTCTGGGCTA GTCTACGTAA GAGTGTTCCT CATTGCACTA 
    AAATTTGATG TTCCTTCAGT CATCCCCTAA ATCGAACGAT ATTTTCTACT 
    ATGCCGTGTT TTGGTTTCTC AGAATATCAT CAAGTATTTT TGTACGAGCT 
    ATTTTTTTTT TGGTTTNTNT TTTGGGNCNN ANCCNAAGGG TTGGNTTTTT 
    TNGNGNNCNN CCNNNGAAAC TCNAANNNAG GGNAAGGCAG CCCCNTTGNN 
    GNCCCNATTC AANCCTNAAN NNTTNTNNTN GGGNACNGTT TNNNCCCCCT 
    TTTTNNTTTG NATAANNGNA GGTTGGCTNA AAAATNAAAA NNAGTCAATT 
    TTGNNAATNT CCTTCCAACA AANCCNTGGN ATTTTGAGCG CTTNCTTNNT 
    NNATGGNTTT ATTTTCGGNN ANGGAAACAN GNCCTANNCC NTANATGGTT 
    NCNGGAACCC ANCCGGGGCC GCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30084938 [Map]; Strand: w
      • AT1G79980.1 - [+] show detail - pre-tRNA
        Distance: -869; Region: promoter
      • AT1G79990.1 - [+] show detail - structural molecules
        Distance: 0; Region: exon3 (CDS)
      • AT1G79990.4 - [+] show detail - structural molecules
        Distance: 0; Region: exon3 (CDS)
      • AT1G79990.2 - [+] show detail - structural molecules
        Distance: 0; Region: exon3 (CDS)
      • AT1G79990.3 - [+] show detail - structural molecules
        Distance: -843; Region: promoter
      • AT1G79990.5 - [+] show detail - structural molecules
        Distance: -843; Region: promoter
    Flanking Genome Sequence: 53-2315-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CCATACATGA TGCAAAAGAA GAGATGTATG ATGTAGAGAG TTGCAGAGAA 
    ATCTAAGCAT TTCCGTGCTC GCTCCACCAA AAATATCATG TACACAGCCC 
    TGCCAATTAA AATGAATACA AGGAATCTGA AAAGACTAGT AATAAAGAGG 
    GAAATAAATG GATGGATACT ATTACTAGGG GGCAAAGCAA AATACCCAGC 
    GAGTGAAGAG AAGAGGAATG AGGCAATAAT AGACCAACCG GTGAAGGTGG 
    AAGTAGTGAG AGTAGCGTAA TCGAAGAAGT AGACAAGACT AAGGCGAGGA 
    ACACGAAGGC CAAGAAAGAC CATGGTGAAG AGTCCAAGAG TGAGATAGTA 
    AGAGCATTGG AGGCAAATAA TCTGGCCAAC GATAAGCCAA GGGTCCCATA 
    CAGCTGTGCC ATAGAACATG GCTGCTGCAG CAAATTGATA CACCAAAATT 
    TAAGTGTCCC TATATCAAAA TTCCCTATAT CTCTACCTAA ACAAAAACTC 
    TGCTGCAATA ATCAAATACA CAGCTAACGA GATCTAGGAA ATCCCTAGTT 
    TCGATTTACA TCCTCAATTA CAGATCAATT CGGAAAACCC ACCTAAGATC 
    ACGGAAGGCT AGATTCGCGA AAGGGAGAAA TCAAACCGGA TC

AT1G79980.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G79990.1

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.2

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.3

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 75407 Blast hits to 32587 proteins in 820 species: Archae - 58; Bacteria - 8535; Metazoa - 29979; Fungi - 16971; Plants - 9768; Viruses - 8; Other Eukaryotes - 10088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.4

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79990.5

Model type
Protein coding
Short Description
structural molecules
Computational Description
structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74269 Blast hits to 32109 proteins in 811 species: Archae - 56; Bacteria - 8450; Metazoa - 29737; Fungi - 16170; Plants - 9747; Viruses - 0; Other Eukaryotes - 10109 (source: NCBI BLink).
Link
InterPro Scan - TAIR