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53-2317-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 189505 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -1878; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -4374; Region: intergenic
    Flanking Genome Sequence: 53-2317-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAA GACAAAAAAA GAATGAATTA TAGTGATGCA TTATTAACAA 
    TGAGTCTTGA CAAGTATTGA TTGCTCGAGA AATTTTAATA TTTATACGTT 
    ATTGTAATAA TTTCACAGTT TTTGGTACTC ATTTTAAAAT TGTAACTAAT 
    TACATGCTAC ATGTGGAGAA ATATTAGAAA AGATATCAGA ATTTGGAAAC 
    GTGAATGTTC GTTGAGTAAT AATGTATACG AACAATATCA TGTTTGATTT 
    GTATTCCAGA CAGCTCAATC TTTATCGTCT CTCAACTATT CATCAATAAT 
    TATCAGCGAC TGGTTAAGAA ATACTAATAT CTATATGGCA ACAAAACTTT 
    TGGGCCTGTA ATTTACTATT TTCTTTTGTT TTAAAACTGG GTGTTGACAA 
    ATATTTTTTG AGCCCTTAAA CCAAATGTGT TGTTGAAAAA TCTGGCTCAT 
    TTTTAGTGTC TATTTGGAAA ATATGTCTCA TGGGCCTTTG ACCCTTCCCC 
    TTTTGCCTAC TTTCATAACC TGTTTGGTAG ATAGTAACTA GTAAAGTTCG 
    GTCTATTTTT AAAAAGCCTT GTGCATGATC TCCAAGTACG TATTTCTTGA 
    ATATGGCGAT TACGATCGAG TTTGGAATGA GAGGTAACAG CTTTGGAGTG 
    GGCAATGATG TTCTTGGTTT TCAAAAAGTC ATCTTTACAT GATCCGGGAA 
    GTCACCGACA CTGANANGTG TGTTTCCTTC AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 790910 [Map]; Strand: w
      • AT4G01830.1 - [+] show detail - P-glycoprotein 5
        Distance: -463; Region: promoter
    Flanking Genome Sequence: 53-2317-1 - 3-prime edge 
    CATGGAATAC ACGACCGAGT TGAGGACAAT GGAAATTAGT AGAGCCCATG 
    ACACAAACAC TGATGATACT TTCATATTTT TTGTAAGGAG TTTTCTACTT 
    AAAAATACAA ATCATGTTAA ACATTATGGT CATTATTAAT CAACATTACA 
    TATATACCAT AAAATAAACA AACAAAAAAA ACAATTACAT CAAAATCATG 
    ATGAACTATC AAAATCGTGT TTGTTGTTAG CCAAAAAAAC CAATAAAACA 
    TCCCACTGTT GCGCCTCTTA AATTTTTGTT TATGTCACAC CTAATAACAG 
    CATCTTTAAA ATACTATTTA TCTGATATCC CACGATGTCC TTCTTGATTT 
    TGTATTTATA AACAAATTAA ACTATCTTTC AATGTTTTAA TGAACCCATA 
    TTTCACCTGT TTATATGATC CCATATCTTT CAATGATTTG ACTTTGTTTC 
    ATTGATAATA CTTGGTGAGT CATTTTTCAA TGGTCGTTCA TTCAAACATT 
    CCAACACATA AGGAGATGAA GAAGGGGAAC TTGGAAGCGA ACACAAAGAC 
    AGTACCGTTC TACAAATTGT TTTTCTTCTC AGATTCTACC GATGTGTTGT 
    TGATGATCGT TGGTTCGATC GGAGCTATCG CAAACGGGGG TTTGTTCTCC 
    GTTAATGACA TTATTGGTTG GGTGAACTCA TTGATGCATG GGGTCCAACC 
    AGAACAATGA AGAGATTGTT GANAGAGTTT CC

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01830.1

Model type
Protein coding
Short Description
P-glycoprotein 5
Computational Description
P-glycoprotein 5 (PGP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 3 (TAIR:AT4G01820.1); Has 845817 Blast hits to 392712 proteins in 4168 species: Archae - 14768; Bacteria - 661377; Metazoa - 18002; Fungi - 12658; Plants - 9684; Viruses - 32; Other Eukaryotes - 129296 (source: NCBI BLink).
Link
InterPro Scan - TAIR