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53-2327-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28963978 [Map]; Strand: c
      • AT1G77093.1 - [+] show detail - Defensin-like (DEFL) family protein
        Distance: 829; Region: intergenic
      • AT1G77095.1 - [+] show detail - transposable element gene
        Distance: 38; Region: intergenic
    Flanking Genome Sequence: 53-2327-1 - 5-prime edge 
    CCTGCAACAA AGATAGATTT GTATATTCTT GAACGTAAAT GCACATAACC 
    TTAAGGCAGA AGAGACTACT ATCTGTATGT AATATGAATT GTTTTGGGGC 
    AAAATCTGTA ATATGAATTT TATTCGTTCT GTAGACTCCT AGTAAGTGAC 
    ATTGACACGT GTGAGGCTAG AAAATGATTA GCCACAAATC ACAAAAGAAG 
    TTAAGAGGCA TGCGTATCAG CCACAAAAAT CGGTTAGTCT CGTCCACGGC 
    TTTAGACTTT AGTGTTTCCA GGGGAAAGAT TGGCTGTCGT GAAAAAAGGT 
    CTTCTTGCCG GGAGAGTTCC TGGTCTGTCC GAACCTGATG ATGAAGGTTC 
    GTTTCACCTC TGTTCTTGAT TCCTCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28964094 [Map]; Strand: c
      • AT1G77095.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2327-1 - 3-prime edge 
    GTTGCAGGAT TGTGAAGTTG TGTATTGAAA TATGCGATCA CATCCTGTAT 
    CTGAGTTTTT GACGTACTTC CCACTAACTC TGCAATCCCA TCAAGTCTAA 
    TTCCTTTATT CATTGTCACT TTCCCAACAG TTAAAGCAAG ATTCACAACA 
    ACATGCNTTA GCTTTTTCTG GTGGTATAAC ACTCTTCTGT TTATGCTTGA 
    AACCACTTCG ATGGCCGTGT ATCTTATAGC AGGTGTCAGC GTTGTGTCCA 
    GTGTAGCCGC AATGAGAACA TTGAACTTTT GGCTTTGAAT TAGCAGGAAA 
    TAACCTGGTC GCATTCACGG CAAACTGATC ATTATGTGAA ACCGAAATGT 
    TGAATGTGGA AGCATTGGTT GGTACTGTGA CAATGTTGCA TTGACTGTGA 
    TAAAAAGGTT GTAAATCTCT GCCAGGTCCG AATAGTTGAG TAAGAATCAT 
    TCAGGCCTGA GAGAAACTTA AAAATCTTGG CATGCTTGGC AACAGAGTAA 
    GTAGCAGTAC AACATTTGCA ATTTTGGCAA GTATTGACAC AACTAGCTCC 
    ATCCAAGTCA TCCCACAGAT TCTTCAATGC GGTGTAGTGC ACTTCGACCT 
    AAGGACTTGG TTGTCGAATT GGAATTTCCC GTCCCAATCC AGAGGAATCT 
    TGAAGCACAC GTAACCGCCT CGAGGGCACT TCAACCTAAG GACTTGAAAA 
    AAGTCAACCC GTGGCGTGAC AAAGAAGCAT GCCG

AT1G77093.1

Model type
Protein coding
Short Description
Defensin-like (DEFL) family protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G76954.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77095.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.8e-14 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR