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53-2344-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9543939 [Map]; Strand: w
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2344-1 - 5-prime edge 
    AGAAGATCCT CTCCGGCTAT ATTTGCTATA TCTGTGAGAG CTTGCACCCA 
    TCTTTGTTTC TGATCCCCTG GTTGTTTGTC CTTGCTGACC TCGCATGTCT 
    TTTCAAAGAC CTTTCCAAAT TCGCCGGTCT GTTTTCTAAC TTCCGAAGGA 
    TCAACGTCGT AGAAAACTGG AATCACCATT TGACCTAAAT CATTAAAGCA 
    CTTGTGGATC TCAACCAATT CATTTAAGCA CCACGTTGAA GAAGCATAGT 
    TCTTAGAGAA GATGACGATT GAGATCCTAG CTTCTCTAAT CGCCGATATA 
    AGCTCAGGGG CAATTGTGCG GCTTCTCTCG ATTCCATGAT CGATGAATGT 
    ATTGATTGAT TTGCCGTCGA GAGCCTTGAG AAGATGGCTG AGGAACGTCT 
    TGCGAACATC AACCCCACTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9543816 [Map]; Strand: w
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2344-1 - 3-prime edge 
    ATAACGGGTA CGTTGTTATG ATTCCAATAT ATCTGCTTGC GTTTTCAATT 
    GTCTCAGAAC TATATTTTTG CATAGACTTC GGTTCTTCTT TTAGGGGTGC 
    TTCTTAATTG ACAAAATTGA CTTTTGTTAT TAGGCCTAAT GAAGCANTAT 
    ATGGTTGAAA AGATAGCCAA TGATGTTTTG ATGACTTCGT CGGAATTGAA 
    GCTCATATTG AGGCAATAAA TTTATTGTGC TTGGAATCCA AGGAAGCTAG 
    AATGGTCGGG ATTTGGGGAC AATCAGGGAT TGGTAAGAGT ACCATAGGAA 
    GAGTTCNTCT CTCTCGAC

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR