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53-2346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13947019 [Map]; Strand: w
      • AT2G32870.1 - [+] show detail - TRAF-like family protein
        Distance: -229; Region: promoter
    Flanking Genome Sequence: 53-2346-1 - 5-prime edge 
    TACACGACAT CATTCGACGA CATGACATTT TATTTCTTTT ACATTCAACA 
    TACATATATA ATTATTTATT TTTTGATTTT AATGTGAAGA ATATATATAA 
    TTACTTTGTA TTAAATACTC TTTTTTATTT ATGAAAAAGT TTTAGGTGTT 
    TGATCCATAC TATTTTCGGC TTGAAAACTT CACCAAGTTA AATTAGTTCA 
    TGATTATATT CATGACTTTA AAGATCTTAG ATCTCTTCAT ACACACCCCA 
    ATTGAAAACT AATGCTGAAT TTTTGTGTAT TAAACCTGAC AAAAACAATT 
    TTTTTTTCTT GGGCTAATGA ATCGACGGAT AAATATGAGC CTATTCAGAG 
    GAGCTATGGT GCCTGGGACG TTACTTTGGG AGTATCATTT GTACATATGC 
    TACGTACAAG TGTTGATACA ATTATGATAC ATCTCCAACC ACGTTGCATT 
    GATCATGTCC AACTTTGCAA AAAAATTAGT TGCTACCACA TTAATTTTCT 
    GGCCAGTCTA NAAAATCTCA CCCTAGAGAG CATAACTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13946902 [Map]; Strand: w
      • AT2G32870.1 - [+] show detail - TRAF-like family protein
        Distance: -112; Region: promoter
    Flanking Genome Sequence: 53-2346-1 - 3-prime edge 
    GGTCGTGTAA ATATATACCT ACTGCATATA TACTTAACGG TTAATTATCA 
    ATTGGACCAT ATATACATAT TCTTGTCGAG TCCAAACAGG TCTAGGGATA 
    TTTCAACCTT ACATCTTAGC CTAAACCCGA TCCTAAACAG CTTGGAGATC 
    GATATCAATC GAACCAAAGA TTTAAACCAT GAACAACAGT TTTCGAAATA 
    AAATTCATGA ACAGTCGAAA GAAAATTTAT CTGATGACCG GCACAAGAAA 
    TCTGATAGGA CCCTAATCGT GTTTAACCGG AAAACCCCGC TCTATTTTTA 
    TTTTTTTGAG CAAGTAAGAT ATATAACCGG TTCTATTTAT ATCCTAATTG 
    AAACCCCTTC GTCAAGGAAT CTGCCTATAT ATAGTAACAT ATGCATACCA 
    ATTTCTTCTC TCTCGAC

AT2G32870.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G32880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR