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53-2349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 226550 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -358; Region: promoter
    Flanking Genome Sequence: 53-2349-1 - 5-prime edge
    ACTTTTGGAC TATGTAGAAC TTTTGCATTC TTCTTATCAA ACAACTCTCT 
    CAGAAAATTT TATTACCAAA CAAAAAAAAA AA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 226434 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -242; Region: promoter
    Flanking Genome Sequence: 53-2349-1 - 3-prime edge
    CCAAAAGTAN TTCGTAAACC CANTCTANTC TTCTTNTTAA CTTNTTAANT 
    TTTGGTGTAA TAACTCGATA AAGTTTTCGC GCCATATTGA AATCATGTTT
    ACTCATTTCC TTTTGATCTT GCAAATTATA CGCATAATAA TACATGTTAT
    TTCTATTGTC AAGCAAGTAC AAGAGTGTAA GTGTATATCT CTCTCTATAT
    ATACATATAT GTCACATGTG CATAAAGATT TTGGTTTATC TATAAAACAG
    GACAAAAGGC AAAGTATAGT AGACCCGAAA AACAATCTCT TGGTAGCCTT
    TTCATCTCTC TTGCATTCAC AAGTAAACCT CTCATCATTC ATTTCCACAC
    AGCACTGAAA CTCGAGCATT TGCTCTCTCG AATCCCATTT CCCTAGCTAA
    AAGGTTCGGA ATTCCACAAC AACAACAAAA GA

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR