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53-2352-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 386055 [Map]; Strand: c
      • AT4G00900.1 - [+] show detail - ER-type Ca2+-ATPase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2352-1 - 5-prime edge 
    TCCAAATCCG CCGTCAAAAG TACGGTTTTA ACGAGCTTGC TAAGGAGAAA 
    GGCAAGCCTT TATGGCATCT TGTATTGGAA CAATTCGACG ATACCGCCTT 
    GTGAAGATTC TTCTCGGTGC TGCAGTTTAT CTCTTTCGTT TTAGCCTTTT 
    TAGGTGAAAG CGAGGAACAT GGCTCAGGTT CAGGGTTCGA GGCCTTTGTT 
    GAGCCTTTTG TGATTGTTTT GATTTTGATT TTAAACGCTG TGGTTGGTGT 
    GTGGCAAGAG AGTAATGCTG AGAAAGCACT TGAGGCTCTT AAAGAGATGC 
    AATGTGAATC TGCAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 386170 [Map]; Strand: c
      • AT4G00900.1 - [+] show detail - ER-type Ca2+-ATPase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2352-1 - 3-prime edge 
    NCNTTGGGAN CTCTTCGCTA NTTAAACCCT TGTCTAATCT TGTCTTGTAC 
    TCTTTCAAAC ATTGCTCAAC AGACCAAGAC CACGCCGAGA ACGACTTCTC 
    CTCCTCCATT GGTTCAAAAG CTTTACTTTA ACTCAAAACG GTTATTTTCT 
    TCTTGTGTAT GTGAGAAACC GTTTATCAAA TTCCTGTAGA AAAATTTCAA 
    TCAAACAATG AAATATCAAT TTTTAAACAA CAAATAAAGT TACAGTTTTT 
    ATTGACGGTT TGATATCTTT TACAACATAG AACATAATAA ATAATCAAAG 
    ATCTAAAAAA AATACAAACC CAGAAACCCA AAACAAGAAC TGAGTTAAAC 
    AGAGAGAGAA ACAGAGTATA AATTCTTACC TAAAT

AT4G00900.1

Model type
Protein coding
Short Description
ER-type Ca2+-ATPase 2
Curator Summary
Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm.
Computational Description
ER-type Ca2+-ATPase 2 (ECA2); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ER-type Ca2+-ATPase 1 (TAIR:AT1G07810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR