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53-2358-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24615397 [Map]; Strand: c
      • AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2358-1 - 5-prime edge 
    CTAGAGAGAG AAGAGACACT TGTTTCTGAA CCAAAAGTTA CTCTTTACTC 
    CTCTCACTAT CTCGTCGAAG ATCGGAGCTT GCTAAGGTGA GTTATGCTAA 
    TCTGACAATC TAAGTTTTAA GAAGTTTCCA CTAAGTTCTT TCCATGTTGA 
    CGAAGAAACC TTTCGCTTTT CGCAAAGTCT GCTTTTTTAT TTTGTCCTCT 
    GTAGTACGAT CAAGTTAAAT ACAGTATTCT ACTTTTTCGA CAAGTATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24615520 [Map]; Strand: c
      • AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2358-1 - 3-prime edge 
    GTATCTCCGG TGATGTCGAC GGCGGAGGCG GATTACGTGA AGGCCAAAAC 
    ATCGGTGTGG TGGGATATAG AGAATTGCGA GGTACCCAGA GGTTGGGATG 
    CGCACCGTGA TTGCCTTGAA TGTGAGTTCG TCTTTGTTGA AGATGAATTA 
    TTGTGGACCT GTCTCAATTT CAGCTTATGG CGATACCAAT CTCATNCCTC 
    TCCATCATCA ACAAGCACTT TCTTCTACTG GTGTTGCGCT TAATCACATC 
    CCAGCAGGTG TACTTCTCAC AAAACCCATT TTGTGATTCG TCGNTGATTA 
    NATGCTTTTG TGGNTTTTGT TCTTCTCT

AT5G61190.1

Model type
Protein coding
Short Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Computational Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Link
InterPro Scan - TAIR