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53-2372-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75945 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -556; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -567; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2372-1 - 5-prime edge
    CTCTGGAGGA CAATTACCGG TAAGGGCCAC CGCAGCAATG GGTTAGTTCA 
    AGCAGTGATC TTTGAAGCCT CCGATCGTAA CAATATCGGT GGTTCAGCTT
    ACGGAGGCCA AAGATCTATT TGCTGCACTC CAGATCTGGC CAAGCTTCAA
    GGCTGTAAGC AGGGTGAGAT CATTAGGATT CCTTCTCCAC ATGACCCTCA
    ATGGCCTATC CTCTTACCTG TCCGCTTTAA AGGAAAACGC TCGTCTGCTA
    AGATGGCAGA CACTGAGATT CTTATCACCA AGACTGGAAT CTATAATCTC
    TTATTCATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75829 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -440; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -451; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2372-1 - 3-prime edge
    CTCCAGAGAG TGATGTTCTC AAACCTGCAG TGAGGAGGGA GGATGAGTAG 
    AGTAGAGTAG AGAGCATCAA AAGAGTTGAA AATGTAATCC ATAGAATATA
    CCTGATTAAA GATCGGGAAG AGGCGAAGAT GCCCTCGCTG CCACCGTAGA
    GGAGGAGAGA ATTACCGACA TCGTGGAAGG GCTGGGAAGA GTAGATGTGG
    GCGGAGGCCC CAGCGATTCT AAAGTGTAAT GATAGAAGAA ATGGGCACAG
    CAGCGCAGAC AGCTGGATCA GTTTTCCCAA ATCCATTATC GGGGAACGAG
    GATCTCTGAG GCTAACTAAC AGGAAGGAAG CGGGAGAAGA GCAGCTGCAG
    AGTCGCTCTT GTTCTAGCTG CTGCTGACTT TGGTGGACCA ACCAACTTAA
    TATAATGGTT TGGGCCTTAG AATGGTTTGG GCCTATACCG AGAGGCCCGG
    CTTACCCAGA AAGAAATGCA GCAATAGTCA ATGCCACTG

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR