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53-2375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5370182 [Map]; Strand: w
      • AT4G08450.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2375-1 - 5-prime edge 
    CTNGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATA 
    ACTTGTACGG GATGCTACAA GTTCCTGATG AAGCTTCCTC TTCACTTCCA 
    ATTAATTGTG TCCAAAAAGC TGAGCTTATA TTCATCAACT GCTACAAGCT 
    GAATCAAAAA GCTCTCATTC GCCAACAATT TTTTTTGAAG AAAATGATTT 
    TGCCAGGTGA AGAAGTGCCT TTTTATTTCA CTCACCAAAC AATAGGAAGC 
    TCTATTGGTA TCCCTCTACT TCACATATTA CTTTCTCAAC AATACTTCAG 
    ATTTAAGGCT TGNGTTGTGG NTGATCCCAA GTCTGTGTTC CCAGNTCGTC 
    GTTATCACGT AAACATCCAG GNTTCTTGNN GATNNAAAGG CATATATGGG 
    AACTACTTTG ATTATGCTGA TCAGCCACAT TGCTNNTNAC CATNTNAGAC 
    GGACAATNAT GNGNATGNNT NCNANNCGTN GNTTCCTNTN NTNACANNGA 
    CNNAGNTNCN CTNNNTCANN NNCCATNTCA NGANCGTNNN GNANNCGCGC 
    TTNNNNCTGN NGANNACCNN CGNNGNCNTC CCCATCNCNC CGANCCNCGA 
    NCGNGTCNNA CGNNCNAGNT TGNGNNNNCT NNGNNCNNGC GCNACGGNNN 
    GTCCCNNCCN TCCCCCCCNA NGTNCCACGN CGGNCNGGCA TCNNCTNCGC 
    NTNANCCCNN NCCNAACGTT NTCGACCTNN CGNCNCGNCC ATCNTCTANN 
    CCANNGTACT NCCGNGNTAC ANCNNCNACC CGCNCATNCC NCTCCCGCTC 
    CATTCNCCCT CNNNGTCNNG ACN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5370165 [Map]; Strand: w
      • AT4G08450.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2375-1 - 3-prime edge 
    ATAGCATGTA CATGTCTGCT TTGGTTTCCA CCAGACTTGA ATCGTCATAC 
    CATCTAGCTT TAGTCAATAT CCCACAGTCT GAAAAGTCAA CACTCTTGAG 
    ATGTTTCAGG TTAGAAATGT TTAGGAATAC ATATTCCAAC ATGTCACATT 
    TTCCTATTAA TAGGTATTCG AGCTTAGAGA AGTTCTCGAT CCACCAAGGA 
    ACTTCTTCAA TCGCTGTTTG GCTTAGATCA AGCTCTGAGA TGTTGGTTGA 
    GATATCCGGA AAAATCTTTA ACCGTGAGCA TCTAGCTAGA TTTATGCGTT 
    TTAGAGATTG AAGGTTGATG CCAGTTGGAA AAGTCTCCAG GTTTGTGCAT 
    CCTGACATGT CCAACTCTAT CAAGTTATGG AGATTTCTAA TAGAGGAAGG 
    AAGCTCCACA ATACTTATGC ATTGTTCAAG ATTTAGTATC AGAAGATTCG 
    ATGCCATTGA AAGATCTGGG ATTTCTTTCA GGTTTTTAGA ATCTCGCAAA 
    TGCATAGTTT TAAGGGATGT

AT4G08450.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 55059 Blast hits to 21265 proteins in 952 species: Archae - 84; Bacteria - 24337; Metazoa - 4372; Fungi - 1058; Plants - 20302; Viruses - 196; Other Eukaryotes - 4710 (source: NCBI BLink).
Link
InterPro Scan - TAIR