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53-2382-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13205561 [Map]; Strand: w
      • AT5G34890.1 - [+] show detail - transposable element gene
        Distance: -779; Region: promoter
    2. Chromosome: 3; Position: 11181210 [Map]; Strand: c
      • AT3G29210.1 - [+] show detail - transposable element gene
        Distance: 1238; Region: intergenic
      • AT3G29220.1 - [+] show detail - transposable element gene
        Distance: -4468; Region: intergenic
    3. Chromosome: 3; Position: 12091554 [Map]; Strand: c
      • AT3G30455.1 - [+] show detail - transposable element gene
        Distance: -1401; Region: intergenic
      • AT3G30456.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2859; Region: intergenic
    4. Chromosome: 3; Position: 16087095 [Map]; Strand: c
      • AT3G44470.2 - [+] show detail - transposable element gene
        Distance: -527; Region: promoter
      • AT3G44470.1 - [+] show detail - transposable element gene
        Distance: -527; Region: promoter
    5. Chromosome: 3; Position: 16087179 [Map]; Strand: c
      • AT3G44470.2 - [+] show detail - transposable element gene
        Distance: -611; Region: promoter
      • AT3G44470.1 - [+] show detail - transposable element gene
        Distance: -611; Region: promoter
    6. Chromosome: 2; Position: 567346 [Map]; Strand: w
      • AT2G02190.1 - [+] show detail - transposable element gene
        Distance: -527; Region: promoter
    7. Chromosome: 2; Position: 1741846 [Map]; Strand: w
      • AT2G04940.1 - [+] show detail - scramblase-related
        Distance: -1458; Region: intergenic
      • AT2G04950.1 - [+] show detail - transposable element gene
        Distance: -1336; Region: intergenic
    8. Chromosome: 2; Position: 2558858 [Map]; Strand: c
      • AT2G06450.1 - [+] show detail - transposable element gene
        Distance: -1336; Region: intergenic
      • AT2G06460.1 - [+] show detail - transposable element gene
        Distance: -4409; Region: intergenic
    9. Chromosome: 2; Position: 3015131 [Map]; Strand: w
      • AT2G07250.1 - [+] show detail - transposable element gene
        Distance: -695; Region: promoter
    10. Chromosome: 2; Position: 3015215 [Map]; Strand: w
      • AT2G07250.1 - [+] show detail - transposable element gene
        Distance: -611; Region: promoter
    11. Chromosome: 1; Position: 11887136 [Map]; Strand: w
      • AT1G32810.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 1293; Region: intergenic
      • AT1G32820.1 - [+] show detail - transposable element gene
        Distance: -1253; Region: intergenic
    Flanking Genome Sequence: 53-2382-1 - 5-prime edge 
    CCCGCTGGTA TCAAAAGTTT TTATTTCATC CGACATGGCG CGACCGACCT 
    CAACGAGAAG GAAATTGTCG TGAACGGTGA GAAGCTCTGG GGCGTGCAAG 
    GTTCCGGAAC GAACATCGGT CTCAATGCAA AAGGGGAACG CCAGGCTCTG 
    TTGGCCCCTC GAGGAGCTTG CATTCGCCAT TCAGGCTGCG CAACTGTTGG 
    GAAGGGCGAT CGGTGCGGGC CTCTTCGCTA TTACGCCAGC TGGCGAAAGG 
    GGGATGTGCT GCAAGGCGAT TAAGTTGGGT AACGCCAGGG TTTTCCCAGT 
    CACGACGTTG TAAAACGACG GCCAGTGCCA AGCTTTTAAA ATCCCTNGTA 
    AATTATTCTA TGCNTTCTTA CTTACGCTTT AAAATGATTN GTAAACCATG 
    TTAACCACTT TTNAAAGCT

AT1G32810.2

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G10600.1); Has 8965 Blast hits to 5782 proteins in 447 species: Archae - 8; Bacteria - 670; Metazoa - 4118; Fungi - 1126; Plants - 398; Viruses - 78; Other Eukaryotes - 2567 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.6e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT2G02190.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.3e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT2G04940.1

Model type
Protein coding
Short Description
scramblase-related
Computational Description
scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04950.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.0e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT2G06450.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 4.3e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT2G06460.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT2G07250.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.1e-76 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT3G29210.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1)
Link
InterPro Scan - TAIR

AT3G29220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84482.1)
Link
InterPro Scan - TAIR

AT3G30455.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.6e-79 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR

AT3G30456.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G44470.1

Model type
Transposable element gene
Short Description
transposable element gene
Link
InterPro Scan - TAIR

AT3G44470.2

Model type
Transposable element gene
Short Description
transposable element gene
Link
InterPro Scan - TAIR

AT5G34890.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.4e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR