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53-2383-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136258 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2383-1 - 5-prime edge 
    CCCGGTAGTC AATGGTGCAT CCTGGCATGA GACGTGAGAA ATCTCCTAGT 
    ACGCATTCCA CATGCAATGT GCCTCCACAA CCAAAGCATG TATAGAACCA 
    TTTACTTGGA TCCAACTCTG CCTCACAGAT ATCACACCAA TATTTTCCAT 
    TTGCTTCTTC ACCACAACAT AGCGTGAGAA TGTGCTCATC GTTGCTATGC 
    CTTATCTTTT TTGGCAGACT AGCGCACCAT AAACACAAAT TGAAGTCACA 
    ATCAGCACAA CAAAGCATAT AATCTCTTAT GGTTTTTTGA CAAGCATTGC 
    AAGGAAGCTC CTTTTGCTTT TGATCAAAAT ATAAGGGGAT GTAAATGGCC 
    ATCATGGACG AACGGCTCCG TAAGGGAACC ACAATGTACA TCGATATCGC 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136377 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2383-1 - 3-prime edge 
    CCGGGTATAT ACCGTGGAGG TGGTTTTCAA TAATCACAAC ACTCGACCAA 
    TGTGCAGCCG GTGTCACTCT CGATGCAAGG TTTCTGTAAT CCTTAAGTTT 
    CGTGAGGGTA ACATTGTATA TTTTTTTTGT TCACNGTTCA TGTTTTCTGA 
    TGCATTTCTC ATATTATCTG TGAGGCATTG CTACNATTTT TCATGTGAGA 
    GGAAAAGGCT TTGATGTTTT ATTCTAAATT GATGAGTGTA TCTTTTACGG 
    NGGTTTCTCA ATTCTTCCCC TATTTAATCT TATGAAAATT ATTGGTGTGA 
    TACATGCGAG AGAGAGTTAG ATCCAATTAA ATGGTTCTAT ACCAGTAAAT 
    CGATCGATAC AGTTACTTTG GAGACTTATG TTATTGTTCC CGTTCATG

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR