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53-2383-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136258 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2383-1 - 5-prime edge
    CCCGGTAGTC AATGGTGCAT CCTGGCATGA GACGTGAGAA ATCTCCTAGT 
    ACGCATTCCA CATGCAATGT GCCTCCACAA CCAAAGCATG TATAGAACCA
    TTTACTTGGA TCCAACTCTG CCTCACAGAT ATCACACCAA TATTTTCCAT
    TTGCTTCTTC ACCACAACAT AGCGTGAGAA TGTGCTCATC GTTGCTATGC
    CTTATCTTTT TTGGCAGACT AGCGCACCAT AAACACAAAT TGAAGTCACA
    ATCAGCACAA CAAAGCATAT AATCTCTTAT GGTTTTTTGA CAAGCATTGC
    AAGGAAGCTC CTTTTGCTTT TGATCAAAAT ATAAGGGGAT GTAAATGGCC
    ATCATGGACG AACGGCTCCG TAAGGGAACC ACAATGTACA TCGATATCGC
    TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136377 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2383-1 - 3-prime edge
    CCGGGTATAT ACCGTGGAGG TGGTTTTCAA TAATCACAAC ACTCGACCAA 
    TGTGCAGCCG GTGTCACTCT CGATGCAAGG TTTCTGTAAT CCTTAAGTTT
    CGTGAGGGTA ACATTGTATA TTTTTTTTGT TCACNGTTCA TGTTTTCTGA
    TGCATTTCTC ATATTATCTG TGAGGCATTG CTACNATTTT TCATGTGAGA
    GGAAAAGGCT TTGATGTTTT ATTCTAAATT GATGAGTGTA TCTTTTACGG
    NGGTTTCTCA ATTCTTCCCC TATTTAATCT TATGAAAATT ATTGGTGTGA
    TACATGCGAG AGAGAGTTAG ATCCAATTAA ATGGTTCTAT ACCAGTAAAT
    CGATCGATAC AGTTACTTTG GAGACTTATG TTATTGTTCC CGTTCATG

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR