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53-2400-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23279763 [Map]; Strand: c
      • AT5G57480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2400-1 - 5-prime edge 
    CCTGCATTGC TTAGAAGTGG GAGAATGGAT ATGCATATCT ACATGAGTTT 
    TTGTAACTTC CCATCGTTGA AGATTTTGTT GAAGAATTAT TTGGGGTATG 
    GGGTGGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23279879 [Map]; Strand: c
      • AT5G57480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2400-1 - 3-prime edge 
    AATGCAGGAT CAAGCTTCTC TATATGATTG GTCGTAAACA CAAAGATCCT 
    CTCACTTCCA CAACAAGACC AAAGCCCATC TGTAAAATTC AACAAACCCG 
    ACAACGTTAT AGTATTCCCA TTACCACCTT CCTCTCCCGA ACCACCCGAA 
    CCTGAACCCG AACCGTTTCT

AT5G57480.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink).
Link
InterPro Scan - TAIR