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53-2402-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218639 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -948; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2402-1 - 5-prime edge 
    GTAACAGGCA CCAGCAACAA CAGGGAGCAG CCATGCGCTT CAGTTGATAC 
    AGATAGTGTA GGAAAGGAGA ATGCTAAAGT TGAATTGCCC AAATTGAGTG 
    TGGAGCGACA ACAGATGAAG AAGAAGAAAA AGAATGCAGG GTTTAATTTG 
    CGCAAGAGTT TAGCATGGGA TAGAGCTTTT TCAACGGAAG AAGGTGACTT 
    TTTTTTACCA ATTTCCTGTT AGTAGTAAAG GTCAAAGATT TGGTCTATGT 
    TACTAAGAAT CTTAAGATGT GTGATATGGT CATGAACCAG GTGTTTTGGA 
    TTCATCTGAG TTATCTAAAA TAACTGGAAC TGCTTGCCAT CTTGGTGGAG 
    ATCGGTTAGC TGCCATTCAG GAAGAGTACA GAGAGTCAAT GTCAGCTTCC 
    AAATGTAATG TTTCACCAGG ACTACAAGCA CTTGAAGAAA ACTTATTTAA 
    CGACTTGCCT GTGAATAGTA AAAACAGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218524 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -833; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2402-1 - 3-prime edge 
    CCTGNTACTG TTCCTGCATA NAGTCTNAAC CTGGCATNTA TTCTCGNAAT 
    ACACATCNTT TATACTNATC TGCTATTTNA TCAAATTAAG ATNNAATACA 
    ACTGCGTAAT ATCAGATGCT TTATACACGT CTNACAAAGG GAGAGAGAAA 
    NTNTCATAAC GANGCTNGGN TCGAGAACNA NAAATTGANG CGCTTACCAA 
    TTGGGGAANA AGGAGGCCGA GTNGGAACGA NACNACTAGA TCTNGGGATT 
    TGGAGAGGTG AGCATTNCAA ATAACTCTTT CCTCGGCTCG NNTTANTGTT 
    TCTTCGGNGT ATTCTTCAGA ANCCNATTAT CTTCGTCGTN TTNTCCANAG 
    ATATNTAANA CATCCTCATC CATTNCTAGC TCNTCTTNCN AGCCCAAGAT 
    CTGACGATTN GGAAATCCGG AATCCTATAN CTAGGTNCGT TCANACTTAC 
    ACTGNNAAAA TCTCTTCNGA AGTGGTNGGC GAAAATCCTA NGTCNNTAAA 
    NTCGGAAATT GNGNNGCCGA TGGANAGAGA CGACTGNTGG ATACGAATAT 
    CCCGGNCTCG NAACGCGGAA TNAGGTNGAA NAAACTTGAA GTTGANNGAN 
    TGANNGGCAC CNANNGNCTC TTNNTGTTAA GGTTNTTNCT CGCCCTTTNN 
    NNGTNNNTCN NATTGGGCCG GCCTTTANNC CCCNATTTAN TNAATNCTAA 
    ATNCCCCGCT CACCCNTNTN CNNNGTCCNN NCNCGNNTCG GANNNNATGN 
    ATNNNCNGTC

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR