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53-2412-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215432 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2412-1 - 5-prime edge 
    CTGNNTTTGC AAGTTTTTGC TACAAAAGGC CAACACCTTT AGATCAAATC 
    ACATCTGGAA AAACTTGGAT CTGGAGAAAC TTTGTTCACC TTTTTATTTC 
    CGATCAAAAT TAGGGTTCAG AGTATTTCCA AGAGCACAAG AAGTTGACGA 
    CAATGAACAC AAGAGGTTTT TCACTTCTCT GTTCCTGATT CTTCCCTTGT 
    AATGTGCTCT GTACATTGAT GTTCTTCCTT TTCTTATTTT GGAACAGGAA 
    ATTACTCTAA TGGTTTTACT TCAAAGTTCT TTAAACCGTA CCTTCCTAGT 
    GAATCCGGTG ATGATCTGGT AATAAAACAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215562 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -109; Region: promoter
    Flanking Genome Sequence: 53-2412-1 - 3-prime edge 
    CTCTCTGTTT CGATGCTTTT TCCTTCAAAT GGAAAACAAA CCATTAATAG 
    TACTCTTCTT ATTCAAAAAT AATTCGTTAA GCGGACCAAG GTATCGCTAA 
    GGCCCAAACA AAAAACAAGA AATGGGCCTT AAGTTTGGTT CAATCTATAT 
    CGTGTAAATG ACATTATCGT CCTTAAACAA AAGAACCACA GTAAAGAGTC 
    GAGAAGGGTA TATTAGAGAA AGAAGGACTT GTGACATCTC AATTCTTGAA 
    CAAGAAACTT GAAACTTGAA AGAAGAATGA GATAGTGTTA AGTGGCAGAG 
    TTCCAAGTAT CTTAGTATTA TTCTCCTCCT ATGCCAATGC TTTTCTTATG 
    ATCACATAGA GAGTCATAAC ATTCTTTTTA TATGAACTCG CAGGTTTTAA 
    ACAGCCCTGA TGTGTGAACC ATTCATAATG ATTTCTCCCA AAATCTATAG 
    CTCTAGTATA CATTATTATT GTAAGACTGT GTTGATCGTC TTTTGCACTT 
    CATGTTTCAG ACAAACAAAC AAAATCAAGA AGTGTATAGA AAGCATCAAC 
    ATCGATTATG TT

AT5G60140.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR