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53-2447-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18344315 [Map]; Strand: c
      • AT5G45276.1 - [+] show detail
        Distance: -3879; Region: intergenic
      • AT5G45280.1 - [+] show detail - Pectinacetylesterase family protein
        Distance: -1280; Region: intergenic
    Flanking Genome Sequence: 53-2447-1 - 5-prime edge 
    CTCATACCTA TAGGTGATAA GTCTATAATT AGTAGTATGA ATCTTGATGT 
    AGTATGTCTA ACTATAAAAA TAAATGAATT TGGGAAAGAT CATAACCAAA 
    TGATGTAAGA GGAAGGTAGG GTCCGTGGGA CTAGGAGGAG AAAGGGATAA 
    GGAAAGTGGC CTGGAAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18344439 [Map]; Strand: c
      • AT5G45276.1 - [+] show detail
        Distance: -4003; Region: intergenic
      • AT5G45280.1 - [+] show detail - Pectinacetylesterase family protein
        Distance: -1156; Region: intergenic
    Flanking Genome Sequence: 53-2447-1 - 3-prime edge 
    GGTATGAGAT AATTTTTCTC TTTTCTTGCA GTAGTTCGCT AAAATTATAG 
    TAATGAATAC TAATATACCT ATAGACAAAG ACAGATAATT GTAATATCCA 
    AACAGTTTTA AATAAGTTTC ATGTTCTTTT GATCATAAAT CTACCTTCAT 
    AATGAACATC CACCACCAGC ATATAATAGA TGTTTCTTGA CTTGTATTGA 
    AAAATTCACC ATGTTGGTAC GTAACTTTCC ATTTTACACA CAACCTTCTC 
    AATGACTAGA ATATATGGTT CTTATTTATA AAGAATCTTT TTAATTGAGA 
    ATAAACACCG CCGATTCAAG GATTATATTA AGCTACTTAA TGATTTGACT 
    TTTGCACCGA AACAATATCA ATCAATTTTA CAAATATATA ATGAAGAGAT 
    ATAATCTGTT TAACTTCTAC CCTAATAT

AT5G45276.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT5G45280.1

Model type
Protein coding
Short Description
Pectinacetylesterase family protein
Computational Description
Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT4G19410.2); Has 552 Blast hits to 548 proteins in 96 species: Archae - 2; Bacteria - 42; Metazoa - 115; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR