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Mutant Lines
53-2457-1

53-2457-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 2205660 [Map]; Strand: w
- AT3G06985.1 - [+] show detail - low-molecular-weight cysteine-rich 44
  Distance: 0; Region: exon2 (CDS)
- AT3G06990.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: -727; Region: promoter

GTTNNGAGAN ACATGAAAAT CATATATNCC ACGTNACTTC AGAGTGAATG 
GCCTTGCTGG CAGTGAAGAT CCCAAAGTCG TCTNGGAATN GNGGATTATA 
CAGAACTGTT NCTTGAACAT CANAGGATAC ATAAGAGCGN AAATGTGANA 
TTAGGACTGA TGNGAGAGAG ATGANCTCCC AGAAAACGGG AATGATTTNT 
TNATTTTTGG TNGNGCTTTT TCCCTGACNN ATNANNTNCC ACNANNTCAC 
CCGATACNGG GTATAANANN TNTCATTCCT GTGTTACGGG ACNGGCCCAN 
CCNTGNCCTN NANTCTATNA ANCCATTATT TATGGGCTTG NGATACTCTG 
ATTATATTAG CTATGTACAT GGTCTTAAGA CATTGATCCG AAGTATACGG 
CGATTGATTT ATGTGCGCCT TGATCATATT TTTGAAATGA TCGCCGCTAG 
CTGTTCGTTC ATATATAAAA ATAAAACTAT AAAAAAACAA TCCAGCTTAG 
ACTGAGTGAA AAACTCAAAA AAAAGTAGTA ATGTTTATGG NGGATCAATT 
TTATAAATGC CGACCAAAAG AAAAAAAAAG GGNNCATTTT TTTAATTTCA 
AAAAATTTTT TTTANNNCAN TAAAAANGGC CTNATGGANA ATNAANGNGN 
CAATTGGCCC NANGCTNACC TGGTTTTNNG GGTAAAGNCA NNGAGTTTNG 
GGNATCCAAA AATAAGGNTT TTGNNNGGCC CNGGTN

3 prime edge [+] show sequence

Chromosome: 3; Position: 1124587 [Map]; Strand: w
- AT3G04260.1 - [+] show detail - plastid transcriptionally active 3
  Distance: 0; Region: intron9 (CDS)

CTTGGAATAG TTGCTAGTAG TTAGAGATTG AAGATGTGGT TATGTGCTTG 
AAATTGTTCA CTCGATTACT AGTCTGTTTT AATCTGAGAT TTGTTCTGCT 
CTGTATTCAA GACATGATAC TTGATCTCTG AATGTTGATC TCGAGTAGAC 
GATTTAATAT GTCGAATCAA GCTACATGAA GGAGACACGG AGTTCTGGAA 
ACGTCGGTTT CTTGGAGAAG GCTTGATTGA AACATCAATT GAATCCAAGG 
AAACGACTGA ATCAGTGGTT ACAGTGAGTC GGAGAAAGCG ATTGAAGACG 
TTTCAAAAGA AGCTGACAAT GATGAGGAGG AACAGGAAGG AGATGAGGAT 
GATGATGAAA CTAAAGAGGA AGAGGAAGTG GTTGTTGCAG AAACTGAGAA 
TCGAGCAGAA GGAGAGGATT TAGTGAAGAA TAAGGCAGCT GACGTGAAGA 
AGCATCTTCA AATGATTGGA GTCCAACTCT TGAAGAATCC GATGAAGCAA 
ACAGAACAAA TAAACGTGGG AAGAGGGCAT CTCGTATGAC ACTCGAGTTT 
AGTACGTATA ACACACTATG AATCATAGTC TATTATATGT TTATGATTTA 
GTTAGTCGCA TGATCATGAA TTTGATAGTT TAAGCCGGTA AAGCATTATT 
ACACAATTGT TTTATGGTCC ATCATGTTAA TAATAATAAT GCATAATAAT 
GAATTTGTGT AGGTGATTGA ACTGGGTGGA ATTACCAGCC CGG

AT3G04260.1

Model type: Protein coding
Short Description: plastid transcriptionally active 3
Computational Description: plastid transcriptionally active 3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 11987 Blast hits to 8407 proteins in 477 species: Archae - 24; Bacteria - 285; Metazoa - 3588; Fungi - 1065; Plants - 3982; Viruses - 208; Other Eukaryotes - 2835 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06985.1

Model type: Protein coding
Short Description: low-molecular-weight cysteine-rich 44
Curator Summary: Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description: low-molecular-weight cysteine-rich 44 (LCR44); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 43 (TAIR:AT3G07005.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06990.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G07000.1); Has 1311 Blast hits to 600 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1303; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR