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53-2464-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2835 [Map]; Strand: c
      • AT4G00005.1 - [+] show detail - PRA1 (Prenylated rab acceptor) family protein
        Distance: -1299; Region: intergenic
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 60; Region: intergenic
    Flanking Genome Sequence: 53-2464-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GTAGTGATTG GCTAAAGTGC AATTATGATG CTTCTCACCA TACAGGGAAT 
    ACAATGTCTG GACTAGGGTG GCTTATCCGC AACTCTCATG GCACGGTTTT 
    GAAATGCGGT ATGGGGTAGT TTCAAGGTCG AATGACTCCA GAAGAAGCTG 
    AATGCTCGAC ACTTATCTGG CCTATTCAAG CCGCTAGGGC CTATGGGTAT 
    ACAAAGGTGA TCTTTGAAGG TGATAACATA AATATTAATC GACTAATTAA 
    CCAGAAGTCT CCAAATCCCC GACTACAACA CTATCTTGAT ATCATATACA 
    GTTGGATC

AT4G00005.1

Model type
Protein coding
Short Description
PRA1 (Prenylated rab acceptor) family protein
Computational Description
PRA1 (Prenylated rab acceptor) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B5 (TAIR:AT5G01640.1); Has 274 Blast hits to 274 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 272; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR