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53-2481-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75379 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -1; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -141; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -141; Region: promoter
    Flanking Genome Sequence: 53-2481-1 - 5-prime edge
    CGTTACAGGG CGGGCGGCGA TGGAGCAGAG TCCTCCTCAA AAAAATTCCA 
    GTCTTCTTCT TATCACTCGA CCAACGAATT CCAGGCAGNG GCATTGACTA
    TNGCTGCATT TCTTTCTGGG TAAGCCGGGC CTCTCGGTAT AGGCCCAAAC
    CATTCTAAGG CCCAAACCAT TATATTAAGT TGGTNGGTCC ACCAAAGTCA
    GCAGCAGCTA NAACAAGAGC GACTCTGCAG CTGCTCTTCT CCCGCTTCCT
    TCCTGTTAGT TAGCCTCANA GATCCTCGTT CCCCGATAAT GGATTTGGGA
    AAACTGATCC AGCTGTCTGC GCTGCTGNGC CCATTTCTTC TATCATTACA
    CTTTANAATC GCTGGGGCCT CCGCCCACAT NTACTCTTCC CAGCCCTTCC
    ACNATGTCGG TAATTCTCTC CTCCTCTACG GGGGCAGCGA GGGCATCTTC
    GCCTCTTCCC GATCTTTAAT CAGGTATATT C
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75259 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -261; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -261; Region: promoter
    Flanking Genome Sequence: 53-2481-1 - 3-prime edge
    AACCCACCGG ACTCAGTAAA CTAGTCTGTA ACACAATATC TTCTATTTCA 
    GATAAGATTT AGCTTGGAGA AGAGCAAGTT CCGAAAATGG AGGGGCAGTC
    GTGTATAGAT CCACCACCCA CAGGTTCGTA GATTCCATAA CCTTGGATTG
    TGTTTTCTTT TTGCTTTCTC GGCGACAAAT TCCTCCGATT TTAGTGAACA
    TGTCTCTGAT TTTGGTGTCC TGTGGTGGAT CTGCCGGAGC AAGTCTTAAA
    CTTGACTTGG ACTGTTTTTA CTAGCTAATT CTGGGCGCTA TTTCGTCTTC
    CTTGTTTCCA TTTCTATCTC TTTCTCTCTG GCCAGTCCTC ATATGTTATC
    ATTTCCTAGC TTTGCCACTA CTCATTACTT TCCCTTTATC GTGTTCATCT
    CCCTCGAC

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR