53-2484-1 - RIKEN Arabidopsis Genome Encyclopedia
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53-2484-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6773388 [Map]; Strand: w
      • AT1G19570.1 - [+] show detail - dehydroascorbate reductase
        Distance: 0; Region: exon3 (3UTR)
      • AT1G19570.2 - [+] show detail - dehydroascorbate reductase
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-2484-1 - 5-prime edge
    GAGGCAAATC TTATTTCAAA ATAGGCTTCT TATTTGATTG ATACAGTACA 
    TTACATAAAA AGGTCCAAGT ACATTATTTG ACTGATATAA GAGAGAGACC
    TTGAACAACA TTACCACACC AACGATCTCA TAACNGGTGC ATAGTTTCAA
    GGGTTAACCT TGGGAGCCCA TCCAGAGATC ACATACTTTT CCTCGGTCTT
    AGTTTTCTCA AAAGAGTCGA GCGAGAACAG AGTCTTCATG TAGTTATGGA
    CATGGGGAAA GCTCTCAGGG ACAGACCAGC TTTTGAAATG GCCAAGAGCA
    ACTTGAAGGT GGTAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6773272 [Map]; Strand: w
      • AT1G19560.1 - [+] show detail - pseudogene, putative CHP-rich zinc finger protein
        Distance: -2520; Region: intergenic
      • AT1G19570.1 - [+] show detail - dehydroascorbate reductase
        Distance: 30; Region: intergenic
    Flanking Genome Sequence: 53-2484-1 - 3-prime edge
    TTTGCCTCCA TATCGAAACT CGGATAAACA CTGGCTACAC GTAACATAAG 
    GGACAAGGGT TTTTTCAGAC AAATTATTTA AGAAACTCAT CGACAGTACT
    TGTGTACTTG ACCTCAGGAT AAAGCTCAGA AGTCTTAACT CCAAAAGAAG
    GATCTATAGT CAAGGAGGTA AAGTCGCTCT TCGCAAGGAC CGTATGGATC
    AAACCCACAA AAAAATCCAT TGGAGGCTGG GTCTCTGCAA ATGCAAGTGA
    CTCGTTTAAT ACTTTGGAGT TTGGACTGAT GAATATTGGA TATCAGAAAC
    TGTTTTTATG GTTTAACTGA TCACCTTTGA TGGTTTTGAG GAGTTCTTCC
    TCAGAAACAT AAGTCTTGTC GAGACTCGAG AGTCTTACCG ATCTTTACAT
    CCCACAAATC AACCATATCG TTCTGCGATA CAATGTTCTT GGGCGGGTGA
    ATGTAGGGCT GG

AT1G19560.1

Model type
Pseudogene
Computational Description
pseudogene, putative CHP-rich zinc finger protein
Link
InterPro Scan - TAIR

AT1G19570.1

Model type
Protein coding
Short Description
dehydroascorbate reductase
Curator Summary
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0; Bacteria - 2090; Metazoa - 1076; Fungi - 186; Plants - 896; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19570.2

Model type
Protein coding
Short Description
dehydroascorbate reductase
Curator Summary
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
dehydroascorbate reductase (DHAR1); FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, apoplast, peroxisome, chloroplast, plasma membrane; EXPRESSED IN: phloem, guard cell, cultured cell, seed, leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 4831 Blast hits to 4829 proteins in 1069 species: Archae - 0; Bacteria - 2139; Metazoa - 988; Fungi - 182; Plants - 765; Viruses - 0; Other Eukaryotes - 757 (source: NCBI BLink).
Link
InterPro Scan - TAIR