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53-2500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212130 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2500-1 - 5-prime edge 
    CNTTGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CTNCTGGATA GAGGATCACC ANCCCNGGCC 
    GTCGANCACN CGTGCNCTAT AATCACTCTT GTCGATCCAC TTGTGAAAAA 
    ATTCGGGACA TTGGAGAAGC AGATCAAGAT TCAGACAAAT GGTAGTGTGT 
    TTGTCAAGGG ATTTGGCAGT ATCATCAGAA GGAATAAAGT GAAGACAACG 
    GATAAGATGA TATTTGAGAT CAAGAAGACT GGTGATAATA ACCTGGTTCA 
    AACAATCAAG ATTCACATTA TCAGTGGATG ATTATTTATA TCTCTCTCTC 
    TCTCTCTCTC TCCATCTCTC TGTCTTTAGT TACGTGTTNT GGAGTTAAAT 
    CAAGATTATT GNGGTGTATT GAATTAATGT AAGAGTTTTT AATTTCTAAA 
    ACTTATCAGA TCTATACAAA TTTGTAGTCT CTCAAGTCTC AATAGCTTTC 
    TTCATTCATA CATATAGAAT GCATTGNACT TTACGCTGTT CATATTAATA 
    TCAGAGACAT TATAGTAAAA TGGCAAATGG GTNNGGGTTC TGTTTTGGTA 
    TTATCCCTCA GTTTATGTNA CAAATCAAAN GCAGANAGAT AAATCACACA 
    GTGACAATAA GTACAACAGA TCTTGGGAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212173 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-2500-1 - 3-prime edge 
    NCTGGGATGA GCTGCTTTAT GAAAAANAAC ATCNTAGNAA ACTCACAANC 
    CAACTGANTG TTAAANGAAA AGCTNTTTCA CATTCACGTT TTTACTTACC 
    AGTNGGCTNT TCTTCTTCGG ATTAAGGATC AGAGTAAAAG ATGGGTTCTC 
    ACGATCATCC AGATACTGTC TTTCATCTTC ATCATCATCA TCAGCCTTAG 
    CATGATCTCT AGAATCAAAA GCCTCAACAT AATCATCATC TTCAACAGGA 
    ACATCATCAG CATCATTATC AACATCTTCA TCATCAGCAT CATTATCATC 
    TTTCTCGACA GCAGCTTCAT CAGCATAATC ATCACTATCA TTGTCTTCAC 
    CACAATTATA ATCAGAATCG TCATCATCCT CATCAAGAGA TAAAACATCA 
    TCACTGGCCT GATTTTGTTC ATCACTATCA GATTCCACTT TGATCTCCTC 
    GCTTTGATCT GAACTTCTTC TTATCTTTTT ACACATTGTC CTATGCTCAT 
    AGATACAGAA ATGGAAACAA CTAGAGCCAT CAAACTCAAA CTCTAAGAAA 
    TCTCCTCCCT TGAGATCTTC GTCCTTCACA ATCCTCTTCC ACCCATTAAC 
    CATAACGAAT TTCTCAGTAT CATCATCACC ACAACATTTC TTTAACTCCA 
    ATTTCCAAAT ATTTCCAGAA ATGCTTCTAA CAGTTACAGG TTTCAGGCAA 
    AGACTTTGGT AAAAATCTGG TGAAAGAATG GGTAGTN

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR