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53-2501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203695 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 758; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3994; Region: intergenic
    Flanking Genome Sequence: 53-2501-1 - 5-prime edge 
    CTATGTAGGG CTGCAAATTG GAAAAAGAAA AAACACTGCT AAAACGCCGT 
    CGTTTTCGAA AATTAGTCAT TAGAGGCCCA CGGGAACACG ATATATGGGC 
    CTAAGTTTCG GTCAATTCTA TATAAGAAAA TGACAATACN TGTCCTAAAT 
    AATAGAGGCA CAGAGACAGA GAAAAGCTTT TAACTTACTG GTTTTACAAC 
    TGTGAGCTGA TTTCTGATGT GCCACTCTAT TAAAAGCTTT TAACTTATTG 
    AATTCATTAG TTTGTTTGGT TATTTTTCGT TAATGTGAAA AAGTTTCNGC 
    TAGAACCATT AGCAGGAAGA TCCGTTTGTG ATATCTAGAG ATTTCTGATG 
    GCTATGAGAC ATTTGTATCT ATCTTGATAA GATTGTTATC TGAGTATAAG 
    CTGTATGCTC TTCGTGATTT GTATATTACA TTTTGATGAA GTCTTTTATC 
    CTGAATAATT GATCTAGTAG GAANGTTTCA AGACTAATTG CTCAGATTCT 
    TATGGAATTT GGGCTTGTGA CAAGGCAGCC ATACAATGGA ATGGAANGGA 
    AGCTGCTTCC TTAACTGAGC AAGGTGCGAT TATTATCTTT AGTGCACCAA 
    ATATGATTTA CTTTTTCTTT CATAAGGTGT TGATGAAGTT TTGCAATGTG 
    TATTCGTTTA NAGCTCTCGA TTTAAGGTTG TTTTGTTTTC NGAATTAAGA 
    ACCCAGAANA AAATGTTTTA CCCATTTCGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203756 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 819; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -3933; Region: intergenic
    Flanking Genome Sequence: 53-2501-1 - 3-prime edge 
    ANTGAGAACN GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    GNGCCTACAA GTATANCAAT ATNAGAGAAA CCTCTGNNNA NNCGGTTNNT 
    GCTACATATG TNCNATNAAT ACANGTCANT TAGGTGTANN AAAANNTAAN 
    NCATCACNTT NGTNAANATC TTGATANTNT GACATTANTG CTCTNATTAG 
    CANGTGACAG NGATCAAATC CATTTTATCT AGGGATCATC ANCAGATANN 
    CTTTATGGNC ATTGNATTGA GCTCTCGATN TAAANGTATG TNNNAACTTC 
    NGTATGCNGT GGAGTCAACG GCCNTGGNTG TNGTGGNGCT TGAGGAGTGC 
    NACTGACATN TGANGAGGAG GNNGGCATNG ATTGAGTTTG ANNAATGNGG 
    NGGTACCGNA NGCCNCNGAG GCGNGTNNAA NGAGAAAGGG TANGGCTATG 
    GACCCGNTAC CCTTGNCGGG CGATATCCNN ATATACTANN CATTTCCNAC 
    CCCCCNCCCC NNNTANNNAA NAAGCCTTGN CCTTGTTTAC NGNAAAAGAA 
    NNGGGGGGGG GNNTGANNAC TNTTTTTTTT CTNCTCATAT NNGANTAGGT 
    TTTTGNNNNA AAANNCGANN NTTGGGANGA AAAAAAAACC CCCNTNNNCC 
    GGNGGGGGGG GGGGNNTTTT NAANAAAAAA AAAAAAAACN TTTNTTTNTT 
    TCNCCNNNNA ANTGGNGNNG GNNNGNNCCN CCAAGGGGGG AANNATNTTT 
    TTTTNCCNNC ACGNGGNNNN NNNNNTGGNN GNTTTNCNCC CCNNCCNCCN 
    CNNNNNNAAN GNCANCNTNN CATNNNNNNN CANNNCNNCC NAANAAAAAN 
    NA

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR