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53-2504-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21620927 [Map]; Strand: w
      • AT5G53290.1 - [+] show detail - cytokinin response factor 3
        Distance: -1660; Region: intergenic
      • AT5G53300.4 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: 11094; Region: intergenic
    Flanking Genome Sequence: 53-2504-1 - 5-prime edge 
    CATGATTTAG AACATAATAA CATCTTCATA CCAATCTGTT ACAAACTTTA 
    TGAAGCAATC TGCAAAAGAC TATCTCTTGC TGCTAATCCG TTAATAACTT 
    TATGAAGCAT TCTGCAAAAG ACTATCTCTT GCAGCCTAAT CTGTTTTGAT 
    AAACTCTCTT TCATCTCAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21620811 [Map]; Strand: w
      • AT5G53290.1 - [+] show detail - cytokinin response factor 3
        Distance: -1544; Region: intergenic
      • AT5G53300.4 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: 11210; Region: intergenic
    Flanking Genome Sequence: 53-2504-1 - 3-prime edge 
    AAATCATGCA TCTATGTTAA TTTAGACCAG TTTTGTTTTT GGCTTAACTG 
    TCTTTAACTC TTTAATATAT GTACATGCAT AGAGTTTGTG TTTTGTGTTT 
    AAGTTATATG TATGTAAACT AGCTTTTAAT TTGACACATT TTCTCTATCA 
    AATGTACATG GTTTATGTTT ATTGAGCAAC AAAAAGTCTT TTACATCTTC 
    AAGTTATTTA AATGTTCCTA TTTAATATAT CAGAAATGTA ACATCACATA 
    TTTCCGAGAA CAAAACGATT CTAAATTACA CTATTTATGA ACTAGAGAGA 
    GTAAAATTTA AAATTAAAAT GGCTACTTAA TTAAAATACA ATCATAATTT 
    TTTTTATTTA AAAAGCAAGT ATATCATATC TTGGTTTACA ATAACATAAT 
    TTCATCTC

AT5G53290.1

Model type
Protein coding
Short Description
cytokinin response factor 3
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53300.4

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1).
Link
InterPro Scan - TAIR