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53-2512-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16365889 [Map]; Strand: c
      • AT5G40847.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -48; Region: promoter
      • AT5G40850.2 - [+] show detail - urophorphyrin methylase 1
        Distance: -464; Region: promoter
      • AT5G40850.1 - [+] show detail - urophorphyrin methylase 1
        Distance: -581; Region: promoter
    Flanking Genome Sequence: 53-2512-1 - 5-prime edge 
    TCTGTATCAC ACTGCAAGTT GTCTTAGATT TAGCAAAACA CTTGACATCT 
    ACACAACACG ACAAGCAAAT TATGGGGAAA GTTGTTGCAC AGGTACAGGT 
    CATGTTTTAC CTGAGCATTC ATGTTTCGCA TCATCATCAT CTTCCTCGGG 
    GACATTTCTT GGGAACTAGG GTCTGATATA TTTAGTCGAT GGACCGTATT 
    GGGCCATTGG GCCTGTTTGG GCTCGTTGAA TTATTAATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16366005 [Map]; Strand: c
      • AT5G40847.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -164; Region: promoter
      • AT5G40850.2 - [+] show detail - urophorphyrin methylase 1
        Distance: -348; Region: promoter
      • AT5G40850.1 - [+] show detail - urophorphyrin methylase 1
        Distance: -465; Region: promoter
    Flanking Genome Sequence: 53-2512-1 - 3-prime edge 
    GATACAGAGA CATATAATCA AATATGTAGT CAGCGGTGTT AAAAACAGAA 
    TCTGTCAAAC CGTCTTCTTC AAATCCACGG AATGAGAAGC T

AT5G40847.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40850.1

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40850.2

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043).
Link
InterPro Scan - TAIR