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53-2519-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 700359 [Map]; Strand: c
      • AT1G03022.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1113; Region: intergenic
      • AT1G03030.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1119; Region: intergenic
    Flanking Genome Sequence: 53-2519-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTTCTTCTA CCGACGACAC GTTCCTCACT ATCTGGTTTG 
    GACTTTTTCA GGTTTCCCAA TATTTTGATT GATTTTTGTT CATATATTTT 
    GTTCATAATT TGTCTCGTGA AAAACATAGT GCATTCGCAT TTCTACACCT 
    TTGTTCAATG AAAATGCAAT TTACCTTTTT ATTAACCGAA AAAAAGAAAA 
    GAATCTTCTA GGTATCAATT CAGCCAATGA AAGATCTGTT AGTTACGCTG 
    ATATTGTTGG TTTCCAAAAT CGTCTCTTGT TGGAAAATAT ATATATTGTG 
    TTTCAAGAAC ACTATGAACA AATGTGTGTA CGAAAAAAAA AAANCNCCAA 
    NTGGGGGNGN CCAAANCNCC CNCNNNTTTT TNANTTTTTN CGAANCNNNC 
    CTATTNGGGA AANTAAAANT AAAATTNNNG AACCNAANAA NAAAANNTTT 
    AAATNCAAAG CCCNAAANNN TCGNCCNTNA AANNANCGGN CAAAAAAANG 
    NNNAAAANNT NGAAANGNCC NTTTTNNANG GTTTNNTTTC AAACNANTTT 
    TNGGNCAANG TCCAAATTTT NGANGTTTTG ACCCAANCCT TTTTNAGGGC 
    AAAGTTCNTT TGGGACCTTT TTGGGAAAAA AAAAATTTTT AAAAACTTNA 
    CCTTGAANCN CNAGGCCCCN GNTGGAANCA TNNCCCTTTG GAAAACCCNA 
    AAAAAAATTG NNGGGGATGG AATNCAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9748988 [Map]; Strand: w
      • AT3G26550.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2519-1 - 3-prime edge 
    ATGAGTTCTG TGGGTGTATT TGATAAGGTG NAAATGGATG AGAAGTCATA 
    TTTAGTATAC ACATTAACAC AAACAAANCA CCCAACCTCT TCCNCCGTGG 
    AGTCTAGTGG NGATGACCTT CCTCTCCAAC CTCTTTTTTC TTGTCCCTA

AT1G03022.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03030.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); Has 3038 Blast hits to 3038 proteins in 1114 species: Archae - 9; Bacteria - 2199; Metazoa - 179; Fungi - 248; Plants - 85; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G26550.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G10370.1); Has 1904 Blast hits to 942 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 0; Plants - 1593; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR