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53-2520-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24217245 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -737; Region: promoter
    Flanking Genome Sequence: 53-2520-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAGAT AAATGCTTCT AACAATTACA TTTTTAGGCA 
    ACGACTTTGG TAAAAAGCTG TTGAAAGAGA TGGGTAATTC CTGAAGAGGA 
    AGGATCTAAA AGTTTCAATA AACTAAAAAT CTACATATAA CCAAAAACAG 
    AGAGAGAAGT GTATTTTTAC CAAATCATCT CCGGAATCAT CAGGTAAGTA 
    CACTTTGAAG AACTTTGGAA GACAATCATC CACAGAAATT CCTGTTCCAA 
    AGCAAGAAAA AAATCAGAAC ATAGGATAGG TTATGTGATT GGAGAATCAA 
    GAACAAACAA TAGCATAAAG ATCTTAACAT AAAAACAAGA GTCTAAAGAA 
    GAAACCTCTG TTCATCATCT TCACCTCTTT GAAACCCTAA CTCTTTTAGT 
    GAAAGTGAAG GTGAAAATGG TTCTTGAAAA TAGAAAAGTA AAAGAGCTTT 
    GTTAATAGAT CTCCGATCTT TTGGTTTGCT TTAGAGATTT TGCCTTTTGT 
    AGCATAACAC AGAGACTGTA TTGTCTTCTA GGCTTATTGC TACAAATGGA 
    AAAATAAAAC ATGTGCTAAC TACTTTTACT TCAATGCTCC ATGAACCGAA 
    CCGATATGAT TTTAATCAAA CCGAAAAAAT ATTATCCTAA CCAAACCAAA 
    CCAATAAAGG GTGAACGAGA ATTTAAAATT CAAATAAATG GGCTTTAAAG 
    TCCGGCCAAT CGATTTGCTT TAATGACAAT AATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16366005 [Map]; Strand: c
      • AT5G40847.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -164; Region: promoter
      • AT5G40850.2 - [+] show detail - urophorphyrin methylase 1
        Distance: -348; Region: promoter
      • AT5G40850.1 - [+] show detail - urophorphyrin methylase 1
        Distance: -465; Region: promoter
    Flanking Genome Sequence: 53-2520-1 - 3-prime edge 
    GATACAGAGA CATATAATCA AATATGTAGT CAGCAGGTGT TAAAAACAGA 
    ATCTGTCAAA CCGTCTTCTT CAAATCCACG GAATGAGAAG CTTGATTAAT 
    GAGATGCTCC CAACCATACC CAAATATTAA TCAGACATTC ATTATTGTCT 
    CTAGAGGTTA ATGTCTTTGA GTGTTTTTAG GTGTTCCTAG AACACAATTT 
    ATGGGAAGAT CCAGCTGCAT CTCCATCCTT CCCTAATTTG GAGTGAAAGA 
    AGCCCTA

AT5G40847.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40850.1

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G40850.2

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043).
Link
InterPro Scan - TAIR

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR