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53-2533-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24173060 [Map]; Strand: w
      • AT5G60030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -85; Region: promoter
      • AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
        Distance: -199; Region: promoter
      • AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
        Distance: -343; Region: promoter
    Flanking Genome Sequence: 53-2533-1 - 5-prime edge 
    TCTCTAACTA CACAAATTAG GGCAATTTCC CCTAAAAGCT GACAACTTTC 
    GAAATAAGTA GAAAACACAA CTACGAAAGT ACCCCTTGCT TGTTTTTTTT 
    TTTNTNNNAN GGNANCNTNT NNNAAANGGG CCANCAAANC CCAAAANTAA 
    AAAANCCCCC AANCNNACAA NNAANNCCCT NCCNNGTTTN CNTTTNGTTT 
    TNAAGGGATT TNAAATNTAA AAAANCNCGA NANATTNTNG TTNTNNAAAA 
    NNTNTGGGGG NAAAGGGTTN TNCNTNANCC ACCCNANGGN NNCAANTNCA 
    ATNNCNANGG CTNGGTTTTT GGTTTTTTTT TTTTGGTTTT GGCNCNCCCN 
    TGGNANAANC NNTNTTTNTN NCCCNCCNGT ANNTNACCTT NGNGGTTTTT 
    TTTAAANCCN NAANCCNNCN TTNTTTANCN GGGGTTTTTT TNNCCGAANG 
    NGNNTTTTTN AANGGGCCCN AATTTANCGG GGTTTTTTTG GTTNNTTTNN 
    CCCCANTNAA AAANTAAAGN NGTTTTTTTT TTTGGGGGAA NTTTTTTTNN 
    ACCTTTTTTT TNGAAAAAGG GGNNNNAAAA NGGNANTTNN NTTTNNNNCC 
    NGGGNCNGNA CCCGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952596 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1994; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4586; Region: intergenic
    Flanking Genome Sequence: 53-2533-1 - 3-prime edge 
    AGGCGCGACG ACCTTTCGAG CTTCTTCCGA TGAAGACTGT CACCGGAAGA 
    GTTGTTAGTG CTGAACCAAT CTCCCTCTCA AAGGCGGCTA AGCTTTCATG 
    GCGNNCCCAA AGCCNNTCTT AGCNCTNTNG CTTTGTGTCT TNTAACAAGG 
    AAACACTAAT NAGGCTTTTA AGANCGGGTT GCGGTTTAAG TTGTTATACT 
    CAATCATACA CATGACATCA AGTCATATTC GACTCCAAAA CACTAACCAA 
    CCTTCTTCTT GCTTCTCAAA GCT

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G60030.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.1

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.2

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1).
Link
InterPro Scan - TAIR