Home
Mutant Lines
53-2540-1

53-2540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 75482 [Map]; Strand: c
  - AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -93; Region: promoter
  - AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -104; Region: promoter
  - AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: -38; Region: promoter
  - AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: -38; Region: promoter
Flanking Genome Sequence: 53-2540-1 - 5-prime edge
```
AGCGGGAGAA GAGCAGCTGC AGAGTCGCTC TTGTTCTAGC TGCTGCTGAC 
TTTGGTGGAC CAACCAACTT AATATAATGG TTTGGGCCTT AGAATGGTTT 
GGGCCTATAC CGAGAGGCCC GGCTTACCCA GAAAGAAATG CAGCAATAGT 
CAATGCCACT GCCTGGAATT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 75597 [Map]; Strand: c
  - AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -208; Region: promoter
  - AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
    Distance: -219; Region: promoter
  - AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: 0; Region: exon1 (CDS)
  - AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-2540-1 - 3-prime edge
```
CNCATGGCTT CCTTNCNGNT AGATANCCTC AGAGATNCTC ATNNNNCNAT 
AATGGATNTG GGAAAACATG ATCCNNCNGN CTGCGCCTGN CTGTGCCCAT 
TANTTCTATC ATTACACTTT AGAATCGCTG GGGCCTCCGC CCACATCTAC 
TCTTCCCAGC CCTTCCACGA TGTCGGTAAT TCTCTCCTCC TCTACGGTGG 
CAGCGAGGGC ATCTTCGCCT CTTCCCGATC TTTAATCAGG TATATTCTAT 
GGATTACATT TTCAACTCTT TTGATGCTCT CTACTCTACT CTACTCATCC 
TCCCTCCTCA CTGCAGGTTT GAGAACATCA CTCTCTGGAG GACAATTACC 
GGTAAGGGCC ACCGCAGCAA TGGGTTAGTT CAAGCAGTGA TCTTTGAAGC 
CTCCGATCGT AACAATATCG GTGGTTCAGC TTACGGAGGC CAAAGATCTA 
TTTGCTGCAC TCCAGATCTG GCCAAGCT
```

AT2G01060.1

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01060.2

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01070.1

Model type: Protein coding
Short Description: Lung seven transmembrane receptor family protein
Computational Description: Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01070.2

Model type: Protein coding
Short Description: Lung seven transmembrane receptor family protein
Computational Description: Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR