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53-2540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75482 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -93; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -104; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -38; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -38; Region: promoter
    Flanking Genome Sequence: 53-2540-1 - 5-prime edge
    AGCGGGAGAA GAGCAGCTGC AGAGTCGCTC TTGTTCTAGC TGCTGCTGAC 
    TTTGGTGGAC CAACCAACTT AATATAATGG TTTGGGCCTT AGAATGGTTT
    GGGCCTATAC CGAGAGGCCC GGCTTACCCA GAAAGAAATG CAGCAATAGT
    CAATGCCACT GCCTGGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75597 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -208; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -219; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2540-1 - 3-prime edge
    CNCATGGCTT CCTTNCNGNT AGATANCCTC AGAGATNCTC ATNNNNCNAT 
    AATGGATNTG GGAAAACATG ATCCNNCNGN CTGCGCCTGN CTGTGCCCAT
    TANTTCTATC ATTACACTTT AGAATCGCTG GGGCCTCCGC CCACATCTAC
    TCTTCCCAGC CCTTCCACGA TGTCGGTAAT TCTCTCCTCC TCTACGGTGG
    CAGCGAGGGC ATCTTCGCCT CTTCCCGATC TTTAATCAGG TATATTCTAT
    GGATTACATT TTCAACTCTT TTGATGCTCT CTACTCTACT CTACTCATCC
    TCCCTCCTCA CTGCAGGTTT GAGAACATCA CTCTCTGGAG GACAATTACC
    GGTAAGGGCC ACCGCAGCAA TGGGTTAGTT CAAGCAGTGA TCTTTGAAGC
    CTCCGATCGT AACAATATCG GTGGTTCAGC TTACGGAGGC CAAAGATCTA
    TTTGCTGCAC TCCAGATCTG GCCAAGCT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR